Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V90_RS10460 Genome accession   NZ_CP130528
Coordinates   2129668..2130063 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA18-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2124668..2135063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V90_RS10435 thiE 2125266..2125907 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V90_RS10440 thiM 2125909..2126700 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V90_RS10445 thiD 2126684..2127514 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V90_RS10450 tenA 2127507..2128196 (-) 690 WP_000396067.1 thiaminase II -
  Q3V90_RS10455 sceD 2128584..2129279 (-) 696 WP_000751998.1 lytic transglycosylase SceD -
  Q3V90_RS10460 ssb 2129668..2130063 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V90_RS10465 istB 2130206..2130967 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V90_RS10470 istA 2130960..2132252 (-) 1293 WP_000777467.1 IS21 family transposase -
  Q3V90_RS10475 - 2132463..2132903 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V90_RS10480 fabZ 2132960..2133400 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V90_RS10485 murA 2133434..2134699 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V90_RS10490 - 2134810..2135043 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=784255 Q3V90_RS10460 WP_000932694.1 2129668..2130063(-) (ssb) [Staphylococcus aureus strain SA18-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=784255 Q3V90_RS10460 WP_000932694.1 2129668..2130063(-) (ssb) [Staphylococcus aureus strain SA18-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992