Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V89_RS10345 Genome accession   NZ_CP130526
Coordinates   2114592..2114987 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA19-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2109592..2119987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V89_RS10320 thiE 2110190..2110831 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V89_RS10325 thiM 2110833..2111624 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V89_RS10330 thiD 2111608..2112438 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V89_RS10335 tenA 2112431..2113120 (-) 690 WP_000396067.1 thiaminase II -
  Q3V89_RS10340 sceD 2113508..2114203 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  Q3V89_RS10345 ssb 2114592..2114987 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V89_RS10350 istB 2115130..2115891 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V89_RS10355 istA 2115884..2117175 (-) 1292 Protein_2001 IS21 family transposase -
  Q3V89_RS10360 - 2117386..2117826 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V89_RS10365 fabZ 2117883..2118323 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V89_RS10370 murA 2118357..2119622 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V89_RS10375 - 2119733..2119966 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=784164 Q3V89_RS10345 WP_000932694.1 2114592..2114987(-) (ssb) [Staphylococcus aureus strain SA19-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=784164 Q3V89_RS10345 WP_000932694.1 2114592..2114987(-) (ssb) [Staphylococcus aureus strain SA19-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992