Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V65_RS10515 Genome accession   NZ_CP130524
Coordinates   2134367..2134762 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA21-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2129367..2139762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V65_RS10490 thiE 2129965..2130606 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V65_RS10495 thiM 2130608..2131399 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V65_RS10500 thiD 2131383..2132213 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V65_RS10505 tenA 2132206..2132895 (-) 690 WP_000396067.1 thiaminase II -
  Q3V65_RS10510 sceD 2133283..2133978 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  Q3V65_RS10515 ssb 2134367..2134762 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V65_RS10520 istB 2134905..2135666 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V65_RS10525 istA 2135659..2136951 (-) 1293 WP_303261911.1 IS21 family transposase -
  Q3V65_RS10530 - 2137162..2137602 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V65_RS10535 fabZ 2137659..2138099 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V65_RS10540 murA 2138133..2139398 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V65_RS10545 - 2139509..2139742 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=783986 Q3V65_RS10515 WP_000932694.1 2134367..2134762(-) (ssb) [Staphylococcus aureus strain SA21-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=783986 Q3V65_RS10515 WP_000932694.1 2134367..2134762(-) (ssb) [Staphylococcus aureus strain SA21-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992