Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V62_RS10330 Genome accession   NZ_CP130522
Coordinates   2105645..2106040 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA23-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2100645..2111040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V62_RS10305 thiE 2101243..2101884 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V62_RS10310 thiM 2101886..2102677 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V62_RS10315 thiD 2102661..2103491 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V62_RS10320 tenA 2103484..2104173 (-) 690 WP_303062328.1 thiaminase II -
  Q3V62_RS10325 sceD 2104561..2105256 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  Q3V62_RS10330 ssb 2105645..2106040 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V62_RS10335 istB 2106183..2106944 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V62_RS10340 istA 2106937..2108229 (-) 1293 WP_000777467.1 IS21 family transposase -
  Q3V62_RS10345 - 2108440..2108880 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V62_RS10350 fabZ 2108937..2109377 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V62_RS10355 murA 2109411..2110676 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V62_RS10360 - 2110787..2111020 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=783801 Q3V62_RS10330 WP_000932694.1 2105645..2106040(-) (ssb) [Staphylococcus aureus strain SA23-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=783801 Q3V62_RS10330 WP_000932694.1 2105645..2106040(-) (ssb) [Staphylococcus aureus strain SA23-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992