Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   MTP06_RS12465 Genome accession   NZ_AP025692
Coordinates   2878665..2880083 (+) Length   472 a.a.
NCBI ID   WP_003948876.1    Uniprot ID   A0ABR4S2M5
Organism   Streptomyces sp. PLM4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2873665..2885083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP06_RS12450 - 2873716..2874730 (-) 1015 Protein_2452 IS481 family transposase -
  MTP06_RS12455 (MTP06_25030) - 2876003..2877757 (-) 1755 WP_186784029.1 sigma factor-like helix-turn-helix DNA-binding protein -
  MTP06_RS12460 (MTP06_25050) - 2878036..2878611 (+) 576 WP_003948874.1 dihydrofolate reductase family protein -
  MTP06_RS12465 (MTP06_25060) radA/sms 2878665..2880083 (+) 1419 WP_003948876.1 DNA repair protein RadA Machinery gene
  MTP06_RS12470 (MTP06_25070) disA 2880254..2881375 (+) 1122 WP_010645237.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  MTP06_RS12475 (MTP06_25080) - 2881457..2882269 (-) 813 WP_240679261.1 hypothetical protein -
  MTP06_RS12480 (MTP06_25090) - 2882625..2883374 (+) 750 WP_008404973.1 phosphatase PAP2 family protein -
  MTP06_RS12485 (MTP06_25100) - 2883487..2884539 (+) 1053 WP_008404974.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 49821.02 Da        Isoelectric Point: 8.0022

>NTDB_id=78365 MTP06_RS12465 WP_003948876.1 2878665..2880083(+) (radA/sms) [Streptomyces sp. PLM4]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIAQVDGKQATARPTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIDALSDHLYLTAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAARLGFTHALVPADPGKVPPGMKVVEVADMGDALRVLPRRRRAQSPASPQEAEERR

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=78365 MTP06_RS12465 WP_003948876.1 2878665..2880083(+) (radA/sms) [Streptomyces sp. PLM4]
ATGGCTGCCCGTACGAAATCCGCCAAGGAACGGCCGTCCTACCGGTGCACCGAGTGCGGCTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGCACCACCGCCCCGGGGC
GGGTGACCAGCTCCGCCCTGCCCATCGCGCAGGTCGACGGCAAGCAGGCGACGGCCCGCCCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTGCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTCGCGGCGAAGGCCGCCTCCGACGAGCACCGGACGCTGTACGTCACCGGCGAGGAGTCGGCCAGCCAGG
TCCGGCTGCGCGCCGACCGGATCGACGCGCTCAGCGACCACCTGTACCTCACCGCCGAGACCGACCTCTCCGCCGTGCTC
GGCCATCTCGACGCGGTCAAGCCCTCGTTGCTGGTCCTGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTCAGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TGGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCCCGCCTGCTGGAGCACCTGGTCGACGTGGTGCTGCACTTC
GAGGGCGACCGGCACGCCCGGCTCCGCCTGGTCCGCGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTCTTCCTGACCCGCCGCGCCGAACCGGTCCCCG
GCACCTGCCTGACGGTGACGCTGGAGGGCCGGCGCCCGCTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCTCGCCGGACCACGTCGGGGCTGGAGACCTCCCGGGTCTCGATGATGCTGGCGGTGCTGGAGCAACGCGGCCG
CATCACCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCCGACCTCG
CGGTGGCCCTCGCCCTGGCCAGCGCGGCGAGCGACACCCCGCTCCCGAAGAACCTGGTGGCGATCGGCGAGGTCGGTCTC
GCGGGCGAGGTCCGGCGGGTGACGGGCGTCCAGCGGCGGCTGGCGGAGGCGGCCCGGCTGGGCTTCACCCACGCCCTCGT
ACCGGCCGACCCGGGGAAGGTGCCGCCGGGGATGAAGGTGGTCGAAGTGGCCGACATGGGGGACGCGTTGCGGGTTCTGC
CGCGTCGGCGCCGGGCCCAGAGCCCGGCAAGCCCCCAGGAGGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

95.975

0.422
  radA Streptococcus mitis SK321

43.111

95.339

0.411
  radA Streptococcus mitis NCTC 12261

43.111

95.339

0.411
  radA Streptococcus pneumoniae Rx1

42.667

95.339

0.407
  radA Streptococcus pneumoniae D39

42.667

95.339

0.407
  radA Streptococcus pneumoniae R6

42.667

95.339

0.407
  radA Streptococcus pneumoniae TIGR4

42.667

95.339

0.407

Multiple sequence alignment