Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PRK60_RS09270 Genome accession   NZ_CP117296
Coordinates   1828393..1828938 (+) Length   181 a.a.
NCBI ID   WP_102168020.1    Uniprot ID   -
Organism   Limosilactobacillus portuensis strain LV1276_C155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1823393..1833938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRK60_RS09260 (PRK60_09260) gyrA 1825342..1827861 (+) 2520 WP_102168019.1 DNA gyrase subunit A -
  PRK60_RS09265 (PRK60_09265) rpsF 1828060..1828356 (+) 297 WP_003716304.1 30S ribosomal protein S6 -
  PRK60_RS09270 (PRK60_09270) ssb 1828393..1828938 (+) 546 WP_102168020.1 single-stranded DNA-binding protein Machinery gene
  PRK60_RS09275 (PRK60_09275) rpsR 1828971..1829207 (+) 237 WP_003716302.1 30S ribosomal protein S18 -
  PRK60_RS09280 (PRK60_09280) - 1829382..1831406 (+) 2025 WP_102168021.1 DHH family phosphoesterase -
  PRK60_RS09285 (PRK60_09285) rplI 1831412..1831864 (+) 453 WP_040530596.1 50S ribosomal protein L9 -
  PRK60_RS09290 (PRK60_09290) dnaB 1831892..1833289 (+) 1398 WP_273646033.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20074.57 Da        Isoelectric Point: 4.4652

>NTDB_id=783623 PRK60_RS09270 WP_102168020.1 1828393..1828938(+) (ssb) [Limosilactobacillus portuensis strain LV1276_C155]
MINRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFINCVIWRKSAENFSNFTHKGSLVGIEGRIQTR
NYENQQGNRVYVTEIVVDNFALLEPRQNGGSQQYGNQQPFGGQGQPQYNNNQPQPGNNAPQSNSSNGFGGNSNQPSQPDN
QFPNDGDDGQSIDLSDDELPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=783623 PRK60_RS09270 WP_102168020.1 1828393..1828938(+) (ssb) [Limosilactobacillus portuensis strain LV1276_C155]
ATGATTAATCGTGCAGTACTTACTGGACGCTTAACAAGAGATCCTGAGTTGCGGTACACAACCAGTGGAACAGCTGTTGT
ATCATTTACTTTAGCTGTTGATCGTCAATTCCGAAACCAAAATGGGGATCGGGATGCTGACTTTATCAATTGCGTCATTT
GGCGTAAGTCTGCTGAAAACTTTAGTAACTTTACTCATAAGGGATCCTTAGTTGGTATCGAAGGACGGATTCAAACCCGG
AATTACGAAAATCAACAAGGTAACCGAGTTTATGTTACCGAAATTGTTGTCGATAATTTTGCACTGCTTGAACCACGCCA
AAATGGTGGTAGTCAACAATATGGCAACCAACAACCATTTGGTGGTCAAGGTCAACCACAGTACAATAATAATCAACCGC
AACCTGGAAATAATGCTCCTCAATCTAATTCGTCTAATGGCTTTGGTGGTAATAGTAACCAACCAAGTCAACCAGATAAT
CAATTCCCTAATGATGGGGATGATGGTCAATCCATTGATTTATCTGATGACGAATTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.511

100

0.608
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.63

100

0.525