Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   MGCS35957_RS04680 Genome accession   NZ_CP117288
Coordinates   904646..905875 (+) Length   409 a.a.
NCBI ID   WP_275910546.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS35957     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 899646..910875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS35957_RS04655 (MGCS35957_01892) - 900267..901544 (-) 1278 WP_037589871.1 hydroxymethylglutaryl-CoA reductase, degradative -
  MGCS35957_RS04660 (MGCS35957_01894) - 901525..902706 (-) 1182 WP_003062183.1 hydroxymethylglutaryl-CoA synthase -
  MGCS35957_RS04665 (MGCS35957_01896) - 902925..903764 (+) 840 WP_003054196.1 thymidylate synthase -
  MGCS35957_RS04670 (MGCS35957_01898) - 903845..904342 (+) 498 WP_084916910.1 dihydrofolate reductase -
  MGCS35957_RS04675 (MGCS35957_01900) - 904362..904532 (+) 171 WP_003054200.1 hypothetical protein -
  MGCS35957_RS04680 (MGCS35957_01902) clpX 904646..905875 (+) 1230 WP_275910546.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  MGCS35957_RS04685 (MGCS35957_01904) yihA 905885..906484 (+) 600 WP_003061604.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  MGCS35957_RS04690 (MGCS35957_01906) - 906628..907371 (+) 744 WP_065358637.1 hypothetical protein -
  MGCS35957_RS04695 (MGCS35957_01908) clpC 907428..909527 (-) 2100 WP_084916912.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  MGCS35957_RS04700 - 910025..910432 (-) 408 Protein_881 IS30 family transposase -
  MGCS35957_RS04705 - 910426..910644 (+) 219 Protein_882 IS30 family transposase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45106.53 Da        Isoelectric Point: 4.5577

>NTDB_id=783387 MGCS35957_RS04680 WP_275910546.1 904646..905875(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35957]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEEVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEISSEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEG
KSKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=783387 MGCS35957_RS04680 WP_275910546.1 904646..905875(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35957]
ATGGCAGGAAATCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGTAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TGTTAGCTGACCTAACAGAAGTTCCAAAACCAAAAGAACTCCTTGAGGTTTTAAACCAGTATGTTGTTGGTCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTGTCATTCACGGAAAGTCGTGATGATGAAGATGT
TGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTCGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCTTTTGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTTGATGAAATTGATAA
GATTGCTAAAAAAGGTGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGAAGTTCAACAGGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGATGGCATTGAAGACATTGTCAAACAACGTTTAGGAGAAAAAGTTATTGG
TTTTGGTCAAAACAGCCGAAAAATCGATGACAATGCTTCTTATATGCAAGAGATTAGTTCAGAAGATATCCAAAAATTTG
GTCTTATCCCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAAATT
TTGACGGAACCAAGAAATGCCCTAGTCAAGCAATATCAGGCTCTTCTTTCTTACGATGGTGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CGATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCACAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

88.998

100

0.89
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.603

98.044

0.575