Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V80_RS10675 Genome accession   NZ_CP130515
Coordinates   2154692..2155087 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA28-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2149692..2160087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V80_RS10650 thiE 2150291..2150932 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V80_RS10655 thiM 2150934..2151725 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  Q3V80_RS10660 thiD 2151709..2152539 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V80_RS10665 tenA 2152532..2153221 (-) 690 WP_000396069.1 thiaminase II -
  Q3V80_RS10670 sceD 2153608..2154303 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  Q3V80_RS10675 ssb 2154692..2155087 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V80_RS10680 - 2155281..2155721 (+) 441 WP_000846750.1 YwpF-like family protein -
  Q3V80_RS10685 fabZ 2155779..2156219 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V80_RS10690 murA 2156253..2157518 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V80_RS10695 - 2157629..2157862 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V80_RS10700 - 2157994..2158086 (-) 93 WP_031789435.1 hypothetical protein -
  Q3V80_RS10705 - 2158538..2158942 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=783347 Q3V80_RS10675 WP_000932694.1 2154692..2155087(-) (ssb) [Staphylococcus aureus strain SA28-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=783347 Q3V80_RS10675 WP_000932694.1 2154692..2155087(-) (ssb) [Staphylococcus aureus strain SA28-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992