Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   MGGS36055_RS01920 Genome accession   NZ_CP117286
Coordinates   363753..364823 (+) Length   356 a.a.
NCBI ID   WP_003057822.1    Uniprot ID   A0AAE9U680
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGGS36055     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 358753..369823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGGS36055_RS01905 (MGGS36055_00770) amiA 359271..361250 (+) 1980 WP_065361437.1 peptide ABC transporter substrate-binding protein Regulator
  MGGS36055_RS01910 (MGGS36055_00772) amiC 361316..362818 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  MGGS36055_RS01915 (MGGS36055_00774) amiD 362818..363744 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  MGGS36055_RS01920 (MGGS36055_00776) amiE 363753..364823 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  MGGS36055_RS01925 (MGGS36055_00778) amiF 364816..365739 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  MGGS36055_RS01930 - 365767..366751 (-) 985 Protein_325 IS30 family transposase -
  MGGS36055_RS01935 (MGGS36055_00784) - 366954..367991 (+) 1038 WP_187417084.1 IS30 family transposase -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 39607.62 Da        Isoelectric Point: 5.6648

>NTDB_id=783254 MGGS36055_RS01920 WP_003057822.1 363753..364823(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain MGGS36055]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELIEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TELKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHSKAKELALDYMNKVGIPNATKRFDDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIVGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=783254 MGGS36055_RS01920 WP_003057822.1 363753..364823(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain MGGS36055]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTCGACGTGCGCGACCGTGTTTTAACGGC
TATTCGGAACGTTTCTTTAGAGCTTATTGAAGGAGAGGTCCTTGCTTTTGTAGGAGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGTATTGCCAACGGCTCGATTGTCTACCGTGGTCAAGAATTA
ACAGAACTAAAAACGAATAAGGAATGGGCTAAGATTCGTGGTTCAAAAATTGCTACTATTTTCCAAGATCCAATGACCAG
TCTTAGTCCTATCAAAACCATTGGTAGCCAGATTACAGAGGTCATTATCAAGCATCAAAAAGTTAGCCATTCTAAAGCCA
AAGAATTGGCGCTTGATTATATGAATAAAGTTGGTATTCCAAATGCGACAAAGCGTTTTGATGACTATCCATTTGAATAT
TCAGGTGGTATGCGCCAACGTATTGTTATTGCCATTGCGTTAGCTTGCCGCCCAGATATCCTGATTTGTGATGAGCCCAC
AACAGCTCTCGATGTTACAATACAAGCCCAAATTATTGAATTGTTGAAATCACTTCAAAAAGAGTACCATTTTACGATTA
TTTTTATCACTCATGATTTAGGTGTTGTGGCAAGTATTGCTGACAAGGTTGCTGTCATGTATGCTGGTGAAATTGTCGAG
TTTGGAACTGTTGAAGAAATTTTCTATGATCCACGTCATCCTTACACATGGAGTTTATTGTCAAGCTTACCGCAATTAGC
CAATGAGTCAGGAGAACTTTACTCAATTCCAGGGACACCACCGTCACTTTATTCGCCAATCGTTGGAGATGCATTTGCGC
TTCGCTCAGAATATGCTATGGTTTTGGATTTCGAAGAGACACCACCTGCTATTAGTGTATCTGATACTCATTGGGCAAAA
ACATGGCTTTTGCACCCAGAGGCGCCAAAAGTTCAGAAACCGGCAGTTATTCAAGATTTACATCAAAAAATCTTGAAAAA
AATGTCACGACAGGAGGAAGGAAATGTCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.5

100

0.784

  amiE Streptococcus thermophilus LMG 18311

76.389

100

0.772

  amiE Streptococcus thermophilus LMD-9

76.389

100

0.772

  oppD Streptococcus mutans UA159

57.27

94.663

0.542