Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   MGGS36055_RS01925 Genome accession   NZ_CP117286
Coordinates   364816..365739 (+) Length   307 a.a.
NCBI ID   WP_003057816.1    Uniprot ID   A0A9X8T611
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGGS36055     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 366165..367991 364816..365739 flank 426


Gene organization within MGE regions


Location: 364816..367991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGGS36055_RS01925 (MGGS36055_00778) amiF 364816..365739 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  MGGS36055_RS01930 - 365767..366751 (-) 985 Protein_325 IS30 family transposase -
  MGGS36055_RS01935 (MGGS36055_00784) - 366954..367991 (+) 1038 WP_187417084.1 IS30 family transposase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34796.93 Da        Isoelectric Point: 6.4058

>NTDB_id=783255 MGGS36055_RS01925 WP_003057816.1 364816..365739(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain MGGS36055]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRRKSKS
ESNELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQAEVEKYKAEQ

Nucleotide


Download         Length: 924 bp        

>NTDB_id=783255 MGGS36055_RS01925 WP_003057816.1 364816..365739(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain MGGS36055]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACTTTCTCTTTAGTTGGAGAATCTGGAAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGTTCTGGCGACATCCTTTATGATGGAAAAGTTATCAATCGAAGAAAGTCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAAATGATTTTCCAAGACCCTGCAGCTAGTCTGAATGAACGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAATCTGTTCAAAACAGAAGAAGAGCGTAAGGAAAAGATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTGACTCGCTATCCTCACGAATTTTCAGGGGGCCAACGCCAGCGGATCGGT
ATCGCTAGAGCCCTAGTGATGAATCCCGAATTTGTCATTGCTGACGAACCTATCTCCGCTCTAGACGTTTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCCGAAAAAGGACTTACATATCTTTTCATCGCCCACGACCTATCAGTTG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTGGAGGTTGCTGAAACAGAAGAACTGTTCAAT
AATCCTATCCACCCGTATACAAAATCTCTTTTATCAGCTGTTCCGATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAATCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTGT
GGGCTAATCAAGCAGAAGTTGAAAAGTATAAAGCAGAACAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

81.759

100

0.818
  amiF Streptococcus thermophilus LMD-9

81.433

100

0.814
  amiF Streptococcus salivarius strain HSISS4

81.433

100

0.814