Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V91_RS10530 Genome accession   NZ_CP130512
Coordinates   2137172..2137567 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA30-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2132172..2142567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V91_RS10505 thiE 2132770..2133411 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V91_RS10510 thiM 2133413..2134204 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V91_RS10515 thiD 2134188..2135018 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V91_RS10520 tenA 2135011..2135700 (-) 690 WP_000396067.1 thiaminase II -
  Q3V91_RS10525 sceD 2136088..2136783 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  Q3V91_RS10530 ssb 2137172..2137567 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V91_RS10535 istB 2137710..2138471 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V91_RS10540 istA 2138464..2139756 (-) 1293 WP_000777467.1 IS21 family transposase -
  Q3V91_RS10545 - 2139967..2140407 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V91_RS10550 fabZ 2140464..2140904 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V91_RS10555 murA 2140938..2142203 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V91_RS10560 - 2142314..2142547 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=783168 Q3V91_RS10530 WP_000932694.1 2137172..2137567(-) (ssb) [Staphylococcus aureus strain SA30-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=783168 Q3V91_RS10530 WP_000932694.1 2137172..2137567(-) (ssb) [Staphylococcus aureus strain SA30-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992