Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   MGCS36089_RS04415 Genome accession   NZ_CP117284
Coordinates   863330..864559 (+) Length   409 a.a.
NCBI ID   WP_003054192.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 858330..869559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36089_RS04390 (MGCS36089_01770) - 858952..860229 (-) 1278 WP_037589871.1 hydroxymethylglutaryl-CoA reductase, degradative -
  MGCS36089_RS04395 (MGCS36089_01772) - 860210..861391 (-) 1182 WP_003062183.1 hydroxymethylglutaryl-CoA synthase -
  MGCS36089_RS04400 (MGCS36089_01774) - 861609..862448 (+) 840 WP_275926252.1 thymidylate synthase -
  MGCS36089_RS04405 (MGCS36089_01776) - 862529..863026 (+) 498 WP_003060782.1 dihydrofolate reductase -
  MGCS36089_RS04410 (MGCS36089_01778) - 863046..863216 (+) 171 WP_003054200.1 hypothetical protein -
  MGCS36089_RS04415 (MGCS36089_01780) clpX 863330..864559 (+) 1230 WP_003054192.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  MGCS36089_RS04420 (MGCS36089_01782) yihA 864569..865168 (+) 600 WP_003061604.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  MGCS36089_RS04425 (MGCS36089_01784) - 865312..866055 (+) 744 WP_065358637.1 hypothetical protein -
  MGCS36089_RS04430 (MGCS36089_01786) clpC 866112..868211 (-) 2100 WP_084916912.1 AAA family ATPase Regulator
  MGCS36089_RS04435 (MGCS36089_01788) - 868709..869125 (-) 417 Protein_820 IS30 family transposase -
  MGCS36089_RS04440 - 869113..869328 (+) 216 Protein_821 transposase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45060.54 Da        Isoelectric Point: 4.5866

>NTDB_id=783153 MGCS36089_RS04415 WP_003054192.1 863330..864559(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEG
KSKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=783153 MGCS36089_RS04415 WP_003054192.1 863330..864559(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
ATGGCAGGAAATCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGTAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TGTTAGCTGACCTAACAGAAGTTCCAAAACCAAAAGAACTCCTTGAGGTTTTAAACCAGTATGTTGTTGGTCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTGTCATTCACGGAAAGTCGTGATGATGAAGATGT
TGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTCGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCTTTTGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
GATTGCTAAAAAAGGTGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAACAGGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGATGGCATTGAAGACATTGTCAAACAACGTTTAGGAGAAAAAGTCATTGG
TTTTGGTCAAAACAGCCGAAAAATCGATGACAATGCTTCTTATATGCAAGAGATTATTTCAGAAGATATCCAAAAATTTG
GTCTTATCCCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAAATT
TTGACGGAACCAAGAAATGCCCTAGTCAAGCAATATCAGGCTCTTCTTTCTTACGATGGTGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CGATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCACAAAAGTGCGTATAACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.487

100

0.895
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577