Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V69_RS06070 Genome accession   NZ_CP130510
Coordinates   1234171..1234944 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA31-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229171..1239944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V69_RS06050 trmFO 1229514..1230821 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V69_RS06055 xerC 1231239..1232135 (+) 897 WP_001015601.1 tyrosine recombinase XerC -
  Q3V69_RS06060 hslV 1232132..1232677 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V69_RS06065 hslU 1232743..1234146 (+) 1404 WP_234718362.1 ATP-dependent protease ATPase subunit HslU -
  Q3V69_RS06070 codY 1234171..1234944 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V69_RS06075 - 1235018..1235092 (+) 75 WP_031761472.1 hypothetical protein -
  Q3V69_RS06080 rpsB 1235291..1236058 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V69_RS06085 - 1236092..1236205 (+) 114 WP_001789890.1 hypothetical protein -
  Q3V69_RS06090 tsf 1236240..1237121 (+) 882 WP_000201392.1 translation elongation factor Ts -
  Q3V69_RS06095 pyrH 1237258..1237980 (+) 723 WP_000057330.1 UMP kinase -
  Q3V69_RS06100 frr 1237999..1238553 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V69_RS06105 - 1238926..1239696 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=783032 Q3V69_RS06070 WP_000055337.1 1234171..1234944(+) (codY) [Staphylococcus aureus strain SA31-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=783032 Q3V69_RS06070 WP_000055337.1 1234171..1234944(+) (codY) [Staphylococcus aureus strain SA31-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428