Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V58_RS11035 Genome accession   NZ_CP130509
Coordinates   2197315..2197710 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA32-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2192315..2202710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V58_RS11010 thiE 2192913..2193554 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V58_RS11015 thiM 2193556..2194347 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V58_RS11020 thiD 2194331..2195161 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V58_RS11025 tenA 2195154..2195843 (-) 690 WP_000396067.1 thiaminase II -
  Q3V58_RS11030 sceD 2196231..2196926 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  Q3V58_RS11035 ssb 2197315..2197710 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V58_RS11040 istB 2197853..2198614 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V58_RS11045 istA 2198607..2199898 (-) 1292 Protein_2139 IS21 family transposase -
  Q3V58_RS11050 - 2200109..2200549 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V58_RS11055 fabZ 2200606..2201046 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V58_RS11060 murA 2201080..2202345 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V58_RS11065 - 2202456..2202689 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=782986 Q3V58_RS11035 WP_000932694.1 2197315..2197710(-) (ssb) [Staphylococcus aureus strain SA32-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=782986 Q3V58_RS11035 WP_000932694.1 2197315..2197710(-) (ssb) [Staphylococcus aureus strain SA32-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992