Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V82_RS10440 Genome accession   NZ_CP130507
Coordinates   2127016..2127411 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA34-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2122016..2132411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V82_RS10415 thiE 2122614..2123255 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V82_RS10420 thiM 2123257..2124048 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V82_RS10425 thiD 2124032..2124862 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V82_RS10430 tenA 2124855..2125544 (-) 690 WP_000396067.1 thiaminase II -
  Q3V82_RS10435 sceD 2125932..2126627 (-) 696 WP_000751998.1 lytic transglycosylase SceD -
  Q3V82_RS10440 ssb 2127016..2127411 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V82_RS10445 istB 2127554..2128315 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V82_RS10450 istA 2128308..2129600 (-) 1293 WP_000777467.1 IS21 family transposase -
  Q3V82_RS10455 - 2129811..2130251 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V82_RS10460 fabZ 2130308..2130748 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V82_RS10465 murA 2130782..2132047 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V82_RS10470 - 2132158..2132391 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=782801 Q3V82_RS10440 WP_000932694.1 2127016..2127411(-) (ssb) [Staphylococcus aureus strain SA34-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=782801 Q3V82_RS10440 WP_000932694.1 2127016..2127411(-) (ssb) [Staphylococcus aureus strain SA34-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992