Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PO767_RS18035 Genome accession   NZ_CP117182
Coordinates   3620906..3621595 (-) Length   229 a.a.
NCBI ID   WP_197538213.1    Uniprot ID   -
Organism   Bacillus velezensis strain Lwp6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3615906..3626595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO767_RS18000 fliW 3615997..3616428 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  PO767_RS18005 - 3616458..3617027 (-) 570 WP_003151397.1 DUF6470 family protein -
  PO767_RS18010 flgL 3617118..3618035 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  PO767_RS18015 flgK 3618047..3619564 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  PO767_RS18020 - 3619580..3620062 (-) 483 WP_022553865.1 flagellar protein FlgN -
  PO767_RS18025 flgM 3620077..3620343 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PO767_RS18030 - 3620413..3620832 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  PO767_RS18035 comFC 3620906..3621595 (-) 690 WP_197538213.1 ComF family protein Machinery gene
  PO767_RS18040 - 3621601..3621885 (-) 285 WP_022553866.1 competence protein ComFB -
  PO767_RS18045 comFA 3621943..3623328 (-) 1386 WP_022553867.1 DEAD/DEAH box helicase Machinery gene
  PO767_RS18050 - 3623436..3624284 (-) 849 WP_003151387.1 DegV family protein -
  PO767_RS18055 degU 3624382..3625071 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PO767_RS18060 degS 3625148..3626311 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25217.87 Da        Isoelectric Point: 8.2927

>NTDB_id=782630 PO767_RS18035 WP_197538213.1 3620906..3621595(-) (comFC) [Bacillus velezensis strain Lwp6]
MNCLLCDSPISSSLTWRSLFSLAPGQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=782630 PO767_RS18035 WP_197538213.1 3620906..3621595(-) (comFC) [Bacillus velezensis strain Lwp6]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCGGGGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTA
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603