Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V87_RS10815 Genome accession   NZ_CP130502
Coordinates   2171281..2171676 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA37-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2166281..2176676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V87_RS10790 thiE 2166879..2167520 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V87_RS10795 thiM 2167522..2168313 (-) 792 WP_303050144.1 hydroxyethylthiazole kinase -
  Q3V87_RS10800 thiD 2168297..2169127 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V87_RS10805 tenA 2169120..2169809 (-) 690 WP_000396067.1 thiaminase II -
  Q3V87_RS10810 sceD 2170197..2170892 (-) 696 WP_000751998.1 lytic transglycosylase SceD -
  Q3V87_RS10815 ssb 2171281..2171676 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V87_RS10820 istB 2171819..2172580 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V87_RS10825 istA 2172573..2173865 (-) 1293 WP_000777467.1 IS21 family transposase -
  Q3V87_RS10830 - 2174076..2174516 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V87_RS10835 fabZ 2174573..2175013 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V87_RS10840 murA 2175047..2176312 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V87_RS10845 - 2176423..2176656 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=782529 Q3V87_RS10815 WP_000932694.1 2171281..2171676(-) (ssb) [Staphylococcus aureus strain SA37-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=782529 Q3V87_RS10815 WP_000932694.1 2171281..2171676(-) (ssb) [Staphylococcus aureus strain SA37-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992