Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PQ615_RS08240 Genome accession   NZ_CP117058
Coordinates   1747501..1747896 (-) Length   131 a.a.
NCBI ID   WP_003098836.1    Uniprot ID   A0A3L8GMQ5
Organism   Streptococcus iniae strain LSSM211007SI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1742501..1752896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS08215 (PQ615_08215) - 1742678..1743322 (+) 645 WP_003098844.1 deoxynucleoside kinase -
  PQ615_RS08220 (PQ615_08220) - 1743383..1744186 (-) 804 WP_003098843.1 ABC transporter ATP-binding protein -
  PQ615_RS08225 (PQ615_08225) - 1744195..1745079 (-) 885 WP_003098842.1 ABC transporter permease -
  PQ615_RS08230 (PQ615_08230) - 1745089..1746051 (-) 963 WP_003098841.1 ABC transporter substrate-binding protein -
  PQ615_RS08235 (PQ615_08235) - 1746065..1747027 (-) 963 WP_003098839.1 ABC transporter substrate-binding protein -
  PQ615_RS08240 (PQ615_08240) ssbA 1747501..1747896 (-) 396 WP_003098836.1 single-stranded DNA-binding protein Machinery gene
  PQ615_RS08245 (PQ615_08245) - 1747968..1748378 (+) 411 WP_003098834.1 GNAT family N-acetyltransferase -
  PQ615_RS08250 (PQ615_08250) ytpR 1748416..1749042 (-) 627 WP_003098832.1 YtpR family tRNA-binding protein -
  PQ615_RS08255 (PQ615_08255) - 1749059..1749376 (-) 318 WP_003098830.1 thioredoxin family protein -
  PQ615_RS08260 (PQ615_08260) - 1749373..1749657 (-) 285 WP_003098828.1 DUF4651 domain-containing protein -
  PQ615_RS08265 (PQ615_08265) pepA 1749798..1750865 (+) 1068 WP_003098826.1 glutamyl aminopeptidase -
  PQ615_RS08270 (PQ615_08270) proC 1750889..1751659 (+) 771 WP_003098824.1 pyrroline-5-carboxylate reductase -
  PQ615_RS08275 (PQ615_08275) - 1751693..1752349 (-) 657 WP_003098822.1 CPBP family intramembrane glutamic endopeptidase -
  PQ615_RS08280 (PQ615_08280) - 1752359..1752811 (-) 453 WP_003098820.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15061.41 Da        Isoelectric Point: 5.9574

>NTDB_id=782453 PQ615_RS08240 WP_003098836.1 1747501..1747896(-) (ssbA) [Streptococcus iniae strain LSSM211007SI]
MYNKVVMIGRLVAEPELIKTAKDKSICRVSLAVNRRYKNADGEKQVDFVPMILWGKLAETLVSYGSKGSLMSIDGELRTR
RYEKEGKSHFMMEILCQSFQLLESRAQRAMRENNADNELADLILDEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=782453 PQ615_RS08240 WP_003098836.1 1747501..1747896(-) (ssbA) [Streptococcus iniae strain LSSM211007SI]
ATGTATAATAAAGTCGTAATGATTGGCCGCTTGGTTGCAGAACCAGAATTAATAAAAACAGCAAAGGATAAGTCTATTTG
TCGTGTTTCACTAGCAGTCAATAGGCGTTACAAAAATGCTGATGGTGAAAAACAGGTGGATTTTGTCCCAATGATACTTT
GGGGGAAATTAGCTGAGACACTCGTTTCTTATGGCAGCAAGGGAAGTTTGATGTCGATTGATGGTGAATTGCGTACAAGA
CGCTATGAAAAAGAGGGCAAATCTCATTTTATGATGGAGATTTTGTGTCAATCTTTTCAGTTATTAGAAAGTCGGGCACA
AAGAGCCATGCGGGAAAACAATGCTGACAATGAGTTAGCAGACCTCATTTTAGATGAGGAAGAATTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GMQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

67.176

100

0.672
  ssbB/cilA Streptococcus pneumoniae D39

67.176

100

0.672
  ssbB/cilA Streptococcus pneumoniae R6

67.176

100

0.672
  ssbB/cilA Streptococcus mitis NCTC 12261

67.176

100

0.672
  ssbB/cilA Streptococcus pneumoniae TIGR4

66.412

100

0.664
  ssbB/cilA Streptococcus mitis SK321

66.412

100

0.664
  ssbB Streptococcus sobrinus strain NIDR 6715-7

65.649

100

0.656
  ssbB Lactococcus lactis subsp. cremoris KW2

57.143

85.496

0.489