Detailed information NTG0782447

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: PQ615_RS05235
• Genome accession: NZ_CP117058
• Coordinates: 1090803..1092032 (+)
• Length: 409 a.a.
• NCBI ID: WP_003099812.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain LSSM211007SI
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1085803..1097032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQ615_RS05215 (PQ615_05215)	-	1086528..1087805 (-)	1278	WP_003099827.1	hydroxymethylglutaryl-CoA reductase, degradative	-
PQ615_RS05220 (PQ615_05220)	-	1087795..1088967 (-)	1173	WP_003099823.1	hydroxymethylglutaryl-CoA synthase	-
PQ615_RS05225 (PQ615_05225)	-	1089163..1090002 (+)	840	WP_017794807.1	thymidylate synthase	-
PQ615_RS05230 (PQ615_05230)	-	1090081..1090578 (+)	498	WP_003099817.1	dihydrofolate reductase	-
PQ615_RS05235 (PQ615_05235)	clpX	1090803..1092032 (+)	1230	WP_003099812.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
PQ615_RS05240 (PQ615_05240)	yihA	1092042..1092641 (+)	600	WP_003099810.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
PQ615_RS05245 (PQ615_05245)	-	1092749..1093462 (+)	714	WP_003099809.1	hypothetical protein	-
PQ615_RS05250 (PQ615_05250)	-	1093534..1094876 (+)	1343	Protein_1023	IS3 family transposase	-
PQ615_RS05255 (PQ615_05255)	-	1095022..1095975 (+)	954	WP_003098612.1	IS30 family transposase	-
PQ615_RS05260 (PQ615_05260)	rplJ	1096239..1096739 (+)	501	WP_003099802.1	50S ribosomal protein L10	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45151.78 Da
• Isoelectric Point: 4.4847

>NTDB_id=782447 PQ615_RS05235 WP_003099812.1 1090803..1092032(+) (clpX) [Streptococcus iniae strain LSSM211007SI]
MAVNRTNDIKVHCSFCGKDQDEVKKIIAGNNVFICDECVALSQEIIKEELAEEVLADLTEVPKPKELLDILNQYVVGQDH
AKKALAVAVYNHYKRVSFTESRDEDEVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLTVADLIQI
LTEPRNALVKQYQALLSYDGVELEFEKAALEAIAAKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVIKVRITKDSVDG
LKKPILETA

Nucleotide

• Length: 1230 bp

>NTDB_id=782447 PQ615_RS05235 WP_003099812.1 1090803..1092032(+) (clpX) [Streptococcus iniae strain LSSM211007SI]
ATGGCAGTTAATCGTACAAACGATATTAAGGTCCATTGTTCATTTTGTGGCAAGGACCAAGATGAAGTTAAAAAAATTAT
TGCAGGGAACAATGTTTTCATCTGTGATGAATGTGTTGCATTATCTCAAGAAATTATAAAAGAAGAATTAGCAGAGGAAG
TATTAGCTGATTTAACGGAAGTTCCAAAACCAAAAGAACTTTTAGATATTTTAAATCAATATGTTGTTGGTCAAGACCAT
GCTAAAAAGGCTTTAGCAGTAGCAGTTTATAACCATTATAAGCGTGTTTCGTTTACAGAAAGTCGCGATGAAGATGAAGT
GGAATTGCAAAAGTCAAATATTCTCATGATTGGCCCAACTGGTTCAGGAAAAACCTTCTTGGCACAAACTTTGGCAAAAA
GTTTAAATGTACCATTTGCCATTGCGGATGCTACTTCATTAACTGAAGCTGGCTATGTCGGCGAAGATGTTGAGAATATT
CTGCTAAAATTAATTCAAGCAGCTGATTATAATGTAGAACGTGCAGAACGTGGCATTATTTATGTTGATGAAATTGATAA
AATTGCTAAAAAAGGGGAAAATGTTTCCATTACACGCGATGTCTCTGGTGAAGGTGTTCAACAAGCCCTGCTAAAAATTA
TTGAAGGCACAGAAGCAAGTGTTCCACCTCAAGGTGGACGTAAACACCCTAATCAAGAGATGATTCAAATTGATACGAAA
AATATTTTGTTCATCGTTGGTGGCGCTTTTGATGGCATTGAAGAAATTGTTAAACAGCGTCTTGGAGAAAAAATTATTGG
TTTTGGCCAAAATAGCCGTAAAATTGATGAAGATGCTTCATATATGCAAGAAATTATCGCAGAAGACATTCAAAAATTTG
GCCTTATTCCAGAATTTATTGGACGCTTACCTGTTGTTGCAGCCTTAGAACAGTTAACAGTTGCTGACCTGATTCAAATT
TTAACAGAACCAAGAAATGCTCTTGTTAAACAATACCAAGCTCTTTTATCTTATGATGGTGTTGAACTTGAATTTGAAAA
GGCTGCTTTGGAAGCTATTGCTGCAAAAGCTATAGAACGTAAAACTGGTGCGCGTGGCCTTCGTTCAATCATTGAAGAAA
CCATGCTTGACATTATGTTTGAAATCCCTAGTCAAGAAGATGTTATTAAGGTTCGCATTACTAAGGACTCTGTGGATGGG
CTTAAAAAACCTATTTTGGAAACGGCATAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-388)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	87.775	100	0.878
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.895	97.555	0.565