Detailed information NTG0782415

Bioinformatically predicted

Overview

• Name: oppD
• Type: Regulator
• Locus tag: PQ615_RS00340
• Genome accession: NZ_CP117058
• Coordinates: 73477..74523 (+)
• Length: 348 a.a.
• NCBI ID: WP_003102192.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain LSSM211007SI
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 68477..79523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQ615_RS00325 (PQ615_00325)	-	69779..71434 (+)	1656	WP_003102201.1	peptide ABC transporter substrate-binding protein	-
PQ615_RS00330 (PQ615_00330)	-	71509..72423 (+)	915	WP_003102198.1	ABC transporter permease	-
PQ615_RS00335 (PQ615_00335)	-	72433..73464 (+)	1032	WP_003102195.1	ABC transporter permease	-
PQ615_RS00340 (PQ615_00340)	oppD	73477..74523 (+)	1047	WP_003102192.1	ABC transporter ATP-binding protein	Regulator
PQ615_RS00345 (PQ615_00345)	amiF	74523..75458 (+)	936	WP_003102190.1	ABC transporter ATP-binding protein	Regulator
PQ615_RS00350 (PQ615_00350)	-	75546..77228 (-)	1683	WP_003102188.1	ribonuclease J1	-
PQ615_RS00355 (PQ615_00355)	-	77230..77460 (-)	231	WP_003102185.1	DNA-dependent RNA polymerase subunit epsilon	-
PQ615_RS00360 (PQ615_00360)	tsaB	77746..78438 (+)	693	WP_003102183.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
PQ615_RS00365 (PQ615_00365)	rimI	78440..78865 (+)	426	WP_003102181.1	ribosomal protein S18-alanine N-acetyltransferase	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38483.08 Da
• Isoelectric Point: 5.1457

>NTDB_id=782415 PQ615_RS00340 WP_003102192.1 73477..74523(+) (oppD) [Streptococcus iniae strain LSSM211007SI]
MTTETILNVKNLHVDFKTYAGDVKAIRDINFELKKGETLAIVGESGSGKSVTTRTLMGLNASNARISGDIDFKGKKLNDL
KEEDWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHEKISKQEALSRALELMHQVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQNQILKLMKELQSQISSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEQEPPMFKVSETHYAATWLL
DERAPEVTPPAPILKRWAKWKKKEGGQA

Nucleotide

• Length: 1047 bp

>NTDB_id=782415 PQ615_RS00340 WP_003102192.1 73477..74523(+) (oppD) [Streptococcus iniae strain LSSM211007SI]
ATGACAACTGAAACAATTTTAAATGTTAAAAACCTCCATGTTGATTTTAAAACCTATGCTGGAGATGTTAAAGCCATTCG
TGACATTAATTTTGAGCTTAAAAAAGGGGAGACTCTTGCTATTGTTGGGGAATCTGGTTCAGGTAAGTCTGTAACCACAC
GTACCCTAATGGGGCTAAATGCTTCAAATGCTAGAATCAGTGGTGACATTGATTTCAAAGGTAAAAAACTTAATGATTTA
AAAGAAGAAGACTGGGTTAAGGTTCGTGGTAAAGAAATTGCCATGATTTTCCAAGACCCAATGACCAGTCTTGACCCAAC
AATGAAGATTGGAATGCAAATTGCTGAAGCCATCTTAATTCATGAAAAAATTTCAAAACAAGAAGCTTTGTCTCGTGCTT
TAGAATTGATGCATCAAGTTGGTATTCCTAATGCAGAAGAACATATCAATGATTACCCACATCAATGGTCGGGTGGTATG
AGGCAACGGGCTGTTATTGCCATTGCCTTAGCTGCTAATCCGGAAATTCTAATTGCAGATGAACCAACCACAGCACTGGA
TGTGACAATACAGAACCAAATCTTGAAATTGATGAAAGAATTGCAATCGCAAATCTCATCATCTATCATCTTCATCACCC
ATGATTTAGGTGTGGTTGCTGGTATGGCTGACCGTGTTGCTGTTATGTATGCTGGTAAGATTGTTGAGTATGGTACTGTA
GATGAAGTCTTCTACAATCCACAACACCCTTACACTTGGGGTTTGTTGAATTCAATGCCAACCACTGATACAGAAGCAGG
CAGTTTGGAATCTATTCCAGGAACGCCACCTGATCTTTTGAACCCTCCTAAAGGTGATGCTTTTGCTGCTCGTAATGAGT
TTGCACTTGATATTGACCACGAACAAGAGCCTCCGATGTTTAAAGTAAGTGAAACGCACTATGCAGCTACTTGGTTATTA
GATGAGCGTGCGCCAGAGGTGACGCCACCTGCACCAATTCTTAAACGCTGGGCGAAATGGAAGAAAAAAGAAGGGGGACA
AGCTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (235-297)

• ABC transporter (ABC_tran) (27-183)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
oppD	Streptococcus mutans UA159	79.71	99.138	0.79
amiE	Streptococcus salivarius strain HSISS4	56.193	95.115	0.534
amiE	Streptococcus thermophilus LMG 18311	55.891	95.115	0.532
amiE	Streptococcus thermophilus LMD-9	55.891	95.115	0.532