Detailed information NTG0782416

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: PQ615_RS00345
• Genome accession: NZ_CP117058
• Coordinates: 74523..75458 (+)
• Length: 311 a.a.
• NCBI ID: WP_003102190.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain LSSM211007SI
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 69523..80458

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQ615_RS00325 (PQ615_00325)	-	69779..71434 (+)	1656	WP_003102201.1	peptide ABC transporter substrate-binding protein	-
PQ615_RS00330 (PQ615_00330)	-	71509..72423 (+)	915	WP_003102198.1	ABC transporter permease	-
PQ615_RS00335 (PQ615_00335)	-	72433..73464 (+)	1032	WP_003102195.1	ABC transporter permease	-
PQ615_RS00340 (PQ615_00340)	oppD	73477..74523 (+)	1047	WP_003102192.1	ABC transporter ATP-binding protein	Regulator
PQ615_RS00345 (PQ615_00345)	amiF	74523..75458 (+)	936	WP_003102190.1	ABC transporter ATP-binding protein	Regulator
PQ615_RS00350 (PQ615_00350)	-	75546..77228 (-)	1683	WP_003102188.1	ribonuclease J1	-
PQ615_RS00355 (PQ615_00355)	-	77230..77460 (-)	231	WP_003102185.1	DNA-dependent RNA polymerase subunit epsilon	-
PQ615_RS00360 (PQ615_00360)	tsaB	77746..78438 (+)	693	WP_003102183.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
PQ615_RS00365 (PQ615_00365)	rimI	78440..78865 (+)	426	WP_003102181.1	ribosomal protein S18-alanine N-acetyltransferase	-
PQ615_RS00370 (PQ615_00370)	tsaD	78855..79874 (+)	1020	WP_003102180.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
PQ615_RS00375 (PQ615_00375)	rpsN	80071..80340 (-)	270	WP_003102179.1	30S ribosomal protein S14	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35198.16 Da
• Isoelectric Point: 6.4061

>NTDB_id=782416 PQ615_RS00345 WP_003102190.1 74523..75458(+) (amiF) [Streptococcus iniae strain LSSM211007SI]
MTAERKKLVELKNVSLSFNKGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDITDGEIIFNDKEVSQL
KGRDLRDFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLAKDKESREAKVQELLDLVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQRLQAEKGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGSSDD
VYNNPIHPYTRSLLSAIPEPDPDKERQRVAEIYDSSIELDGQEREMREITPNHFVLSTEEEAAQYRLNLKK

Nucleotide

• Length: 936 bp

>NTDB_id=782416 PQ615_RS00345 WP_003102190.1 74523..75458(+) (amiF) [Streptococcus iniae strain LSSM211007SI]
ATGACTGCCGAACGTAAAAAATTAGTTGAGCTAAAAAATGTCTCTTTGTCCTTTAACAAAGGCAAAAAAAATGAAGTAAA
AGCTATTAATAATGTCAGCTTTGATATTTATGAAGGCGAAGTTTTTGGACTTGTTGGTGAATCTGGTTCAGGGAAAACCA
CTGTTGGTCGTGCCATTTTAAAACTTTATGATATTACTGATGGTGAAATCATCTTTAATGATAAAGAGGTATCTCAATTA
AAAGGACGTGATTTACGAGATTTCCGCAAAGATGCACAAATGATTTTCCAAGACCCACAAGCCAGTCTTAATGGTCGTAT
GAAAATTAGAGACATTGTTGCTGAAGGTCTCGACATTCATGGTTTAGCTAAAGATAAAGAAAGCCGTGAGGCTAAAGTTC
AAGAATTACTTGACCTTGTTGGTTTAAACAAAGACCATGTGACACGTTACCCACATGAGTTCTCTGGTGGACAACGTCAG
CGTATTGGGATTGCACGGGCCTTGGCTGTTAAACCTAAATTTATCATTGCAGATGAGCCAATCTCAGCTTTAGATGTATC
TATTCAAGCCCAAGTTGTGAATTTGATGCAAAGATTGCAAGCTGAAAAAGGACTGACTTACCTTTTCATTGCCCATGATT
TGTCGATGGTTAAATACATTTCAGATCGTATCGGTGTTATGCACTGGGGAAAAATGTTGGAAATTGGTAGTTCCGATGAC
GTTTACAATAATCCAATCCATCCTTACACAAGAAGTCTCTTATCAGCAATTCCAGAACCAGATCCTGATAAGGAACGTCA
ACGTGTTGCTGAAATCTATGACTCAAGTATAGAATTAGATGGACAAGAAAGAGAGATGCGTGAAATTACACCAAATCACT
TTGTTCTTTCAACTGAAGAAGAAGCTGCTCAATACAGGCTAAATCTTAAAAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.785	97.428	0.534
amiF	Streptococcus thermophilus LMG 18311	54.455	97.428	0.531
amiF	Streptococcus salivarius strain HSISS4	54.125	97.428	0.527