Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PQE20_RS09075 Genome accession   NZ_CP117054
Coordinates   1904885..1905517 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio harveyi strain VH21FL     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899885..1910517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQE20_RS09055 (PQE20_09055) - 1901781..1902260 (+) 480 WP_017190933.1 TIGR02444 family protein -
  PQE20_RS09060 (PQE20_09060) - 1902361..1903368 (+) 1008 WP_005451453.1 hydrolase -
  PQE20_RS09065 (PQE20_09065) - 1903439..1903651 (+) 213 WP_005451451.1 YheU family protein -
  PQE20_RS09070 (PQE20_09070) - 1903776..1904645 (+) 870 WP_005438358.1 phosphoribulokinase -
  PQE20_RS09075 (PQE20_09075) crp 1904885..1905517 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  PQE20_RS09080 (PQE20_09080) - 1905706..1906497 (-) 792 WP_005451448.1 DUF1338 domain-containing protein -
  PQE20_RS09085 (PQE20_09085) astD 1906762..1908219 (-) 1458 WP_272759066.1 succinylglutamate-semialdehyde dehydrogenase -
  PQE20_RS09090 (PQE20_09090) astA 1908248..1909267 (-) 1020 WP_005438349.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=782391 PQE20_RS09075 WP_005381432.1 1904885..1905517(+) (crp) [Vibrio harveyi strain VH21FL]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=782391 PQE20_RS09075 WP_005381432.1 1904885..1905517(+) (crp) [Vibrio harveyi strain VH21FL]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGTCTTTCAGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAACCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471