Detailed information NTG0782376

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PQE20_RS07480
• Genome accession: NZ_CP117054
• Coordinates: 1593794..1594663 (+)
• Length: 289 a.a.
• NCBI ID: WP_272759802.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain VH21FL
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1588794..1599663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQE20_RS07460 (PQE20_07460)	nadC	1589139..1590026 (+)	888	WP_045393857.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PQE20_RS07465 (PQE20_07465)	-	1590291..1590776 (+)	486	WP_272759800.1	pilin	-
PQE20_RS07470 (PQE20_07470)	pilB	1590779..1592464 (+)	1686	WP_272759801.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PQE20_RS07475 (PQE20_07475)	pilC	1592498..1593721 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PQE20_RS07480 (PQE20_07480)	pilD	1593794..1594663 (+)	870	WP_272759802.1	prepilin peptidase	Machinery gene
PQE20_RS07485 (PQE20_07485)	coaE	1594664..1595278 (+)	615	WP_017817675.1	dephospho-CoA kinase	-
PQE20_RS07490 (PQE20_07490)	zapD	1595306..1596046 (+)	741	WP_038897986.1	cell division protein ZapD	-
PQE20_RS07495 (PQE20_07495)	yacG	1596109..1596303 (+)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
PQE20_RS07500 (PQE20_07500)	rplS	1596670..1597023 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
PQE20_RS07505 (PQE20_07505)	trmD	1597065..1597808 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PQE20_RS07510 (PQE20_07510)	rimM	1597836..1598384 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
PQE20_RS07515 (PQE20_07515)	rpsP	1598413..1598661 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32616.82 Da
• Isoelectric Point: 7.5411

>NTDB_id=782376 PQE20_RS07480 WP_272759802.1 1593794..1594663(+) (pilD) [Vibrio harveyi strain VH21FL]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFYFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHISLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=782376 PQE20_RS07480 WP_272759802.1 1593794..1594663(+) (pilD) [Vibrio harveyi strain VH21FL]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTTATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATATAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGCCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.194	100	0.962
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.29	95.502	0.433