Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PQE20_RS07430 Genome accession   NZ_CP117054
Coordinates   1580062..1580676 (+) Length   204 a.a.
NCBI ID   WP_005446268.1    Uniprot ID   A0A9X3MGU4
Organism   Vibrio harveyi strain VH21FL     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575062..1585676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQE20_RS07410 (PQE20_07410) - 1575349..1576266 (-) 918 WP_005446278.1 ABC transporter ATP-binding protein -
  PQE20_RS07415 (PQE20_07415) - 1576500..1578170 (-) 1671 WP_009698752.1 SulP family inorganic anion transporter -
  PQE20_RS07420 (PQE20_07420) can 1578453..1579121 (+) 669 WP_005446273.1 carbonate dehydratase -
  PQE20_RS07425 (PQE20_07425) hpt 1579210..1579740 (-) 531 WP_005446271.1 hypoxanthine phosphoribosyltransferase -
  PQE20_RS07430 (PQE20_07430) opaR 1580062..1580676 (+) 615 WP_005446268.1 transcriptional regulator OpaR Regulator
  PQE20_RS07435 (PQE20_07435) lpdA 1580998..1582428 (-) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  PQE20_RS07440 (PQE20_07440) aceF 1582672..1584573 (-) 1902 WP_272759799.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23559.82 Da        Isoelectric Point: 6.0756

>NTDB_id=782373 PQE20_RS07430 WP_005446268.1 1580062..1580676(+) (opaR) [Vibrio harveyi strain VH21FL]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=782373 PQE20_RS07430 WP_005446268.1 1580062..1580676(+) (opaR) [Vibrio harveyi strain VH21FL]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCTGATATTGCAGAAATTGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCAACTCGCGAAGACTTGGTGGATGAAGTTCTGAATCACGTGGTTCGTCAATTCTCGAACTTCTTATCA
GATAACATCGACTTAGACATTCATGCACGCGAGAACATCGCTAACATCACTAACGCAATGATTGAACTAGTAAGCCAAGA
TTGCCATTGGTTGAAAGTTTGGTTCGAGTGGAGTGCATCAACACGTGATGAAGTGTGGCCACTATTCGTAACGACAAACC
GCACCAACCAACTGCTGGTGCAAAACATGTTCATCAAAGCTATCGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCATGGTATTTGTTACTCTATCTTCGTACAAGCAAATCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

100

0.956
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696