Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PQS35_RS05050 Genome accession   NZ_CP117044
Coordinates   1038233..1038862 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain B-DolR     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033233..1043862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQS35_RS05030 ycbZ 1033634..1035394 (-) 1761 WP_000156531.1 Lon protease family protein -
  PQS35_RS05035 matP 1035580..1036032 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PQS35_RS05040 ompA 1036108..1037148 (-) 1041 WP_000750416.1 porin OmpA -
  PQS35_RS05045 sulA 1037505..1038014 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PQS35_RS05050 sxy/tfoX 1038233..1038862 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PQS35_RS05055 yccS 1038825..1040987 (-) 2163 WP_000875061.1 YccS family putative transporter -
  PQS35_RS05060 yccF 1040997..1041443 (-) 447 WP_001261235.1 YccF domain-containing protein -
  PQS35_RS05065 helD 1041566..1043620 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=782304 PQS35_RS05050 WP_000839153.1 1038233..1038862(+) (sxy/tfoX) [Escherichia coli strain B-DolR]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=782304 PQS35_RS05050 WP_000839153.1 1038233..1038862(+) (sxy/tfoX) [Escherichia coli strain B-DolR]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1