Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PQS36_RS20520 Genome accession   NZ_CP117043
Coordinates   4235242..4235778 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain B-RalR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4230242..4240778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQS36_RS20500 aphA 4230530..4231243 (+) 714 WP_001395166.1 acid phosphatase AphA -
  PQS36_RS20505 yjbQ 4231354..4231770 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PQS36_RS20510 yjbR 4231774..4232130 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PQS36_RS20515 uvrA 4232165..4234987 (-) 2823 WP_000357744.1 excinuclease ABC subunit UvrA -
  PQS36_RS20520 ssb 4235242..4235778 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PQS36_RS20525 yjcB 4235877..4236158 (-) 282 WP_001295689.1 YjcB family protein -
  PQS36_RS20530 pdeC 4236588..4238174 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  PQS36_RS20535 soxS 4238177..4238500 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PQS36_RS20540 soxR 4238586..4239050 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=782301 PQS36_RS20520 WP_000168305.1 4235242..4235778(+) (ssb) [Escherichia coli strain B-RalR]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=782301 PQS36_RS20520 WP_000168305.1 4235242..4235778(+) (ssb) [Escherichia coli strain B-RalR]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489