Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   PO908_RS07945 Genome accession   NZ_CP117042
Coordinates   1534974..1536950 (-) Length   658 a.a.
NCBI ID   WP_021002030.1    Uniprot ID   A0AAP6BPU6
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1529974..1541950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS07930 (PO908_07905) amiD 1529998..1530924 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  PO908_RS07935 (PO908_07910) amiC 1530924..1532420 (-) 1497 WP_003026183.1 ABC transporter permease Regulator
  PO908_RS07940 (PO908_07915) amiA3 1532797..1534776 (-) 1980 WP_394467941.1 peptide ABC transporter substrate-binding protein Regulator
  PO908_RS07945 (PO908_07920) amiA3 1534974..1536950 (-) 1977 WP_021002030.1 peptide ABC transporter substrate-binding protein Regulator
  PO908_RS07950 (PO908_07925) - 1537116..1537799 (-) 684 WP_106079118.1 B3/4 domain-containing protein -
  PO908_RS07955 (PO908_07930) - 1538033..1539643 (-) 1611 WP_021002032.1 CTP synthase -
  PO908_RS07960 (PO908_07935) rpoE 1539827..1540414 (-) 588 WP_003026189.1 DNA-directed RNA polymerase subunit delta -
  PO908_RS07965 (PO908_07940) tig 1540652..1541935 (-) 1284 WP_003026190.1 trigger factor -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72336.78 Da        Isoelectric Point: 7.8834

>NTDB_id=782269 PO908_RS07945 WP_021002030.1 1534974..1536950(-) (amiA3) [Streptococcus anginosus strain CGMH_KH1]
MKKSKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSSDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDSIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGSGTAALALNIDRQSYNHTAKK
TDEEKNSTKKALLNKDFRQALNFALDRESYAAQVNGKDGAATAIRNMFVPSNFVQVGEKSFSDVVEEKLASYGDDWKGVK
LADSQNGLYNPTKAKEKFAKAKAALQAQGVQFPIHLDVPTVETSKSYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NVTYYAPNAAGEDWDISGAVGWNPDYQDPSTYLDILKSTASDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSSTYFKYIKVGNDTVTKKDYEAAKKKWQK
EKAESNKKAQDELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=782269 PO908_RS07945 WP_021002030.1 1534974..1536950(-) (amiA3) [Streptococcus anginosus strain CGMH_KH1]
ATGAAAAAAAGTAAAATCATCGCAGTTGCGGGGCTAGCTCTTTTAACGTCTGGTCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCAGCTGAAACAAAATTTGGTTATGTGTATTCTAGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGGGAAGAATACGCAGAAGTTAAAGCGCAAGACTTTGTAACTGGTTTGAAACATGCTGCCGATAAAAAATCTGAGGCGC
TTTATTTGGTTCAAAACTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGACTTTTCAACGGTAGGTGTG
AAAGCAGTTGATGATTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCAGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGACCCTAACTCAATCCTTT
ATAATGGACCATTCTTGATGAAAGCTATCACAGCAAAATCTGCGGTAGAATATGTTAAAAACAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAGCATTAAACTTGCTTACTATGATGGTCAAGACCAGGACTCATTGGCTCGTAATTTCAAAGA
TGGGGCATACTCATACGCACGCCTCTTCCCAACAAGTTCAAACTTTGCAACTTTTGAAAAACAATTCAAGGACAATATCT
ATACAGCAGAAGCAGGCTCTGGAACGGCTGCTTTAGCCCTTAATATTGACCGTCAATCTTACAACCACACGGCTAAGAAA
ACAGATGAAGAAAAAAATTCAACGAAAAAGGCATTGTTGAACAAAGACTTCCGTCAAGCTTTGAACTTTGCACTTGACCG
CGAATCTTATGCAGCACAAGTAAATGGTAAAGATGGTGCTGCCACAGCAATCCGTAATATGTTTGTACCATCTAATTTTG
TTCAAGTTGGTGAAAAATCATTTAGTGATGTTGTAGAAGAAAAATTAGCAAGCTATGGCGATGACTGGAAGGGTGTCAAA
CTAGCTGATTCACAAAACGGCTTGTACAATCCAACAAAAGCAAAAGAAAAATTTGCAAAAGCAAAAGCAGCTTTGCAAGC
TCAAGGTGTACAGTTCCCAATCCACTTAGATGTTCCTACTGTAGAAACTTCTAAGAGCTACGTTGCTCGGATGCAGTCTT
TAAAACAATCTGTTGAAAAAGTACTTGGTAAAGAAAATGTTGTCATGGACTTGAACATGATGTCAGAAGATGACTTTAAC
AACGTCACTTACTATGCTCCAAATGCAGCTGGAGAAGACTGGGATATCTCAGGCGCTGTTGGTTGGAATCCCGACTATCA
AGATCCATCTACTTATCTTGACATTTTGAAATCAACAGCTTCTGATAATACGAAGACATGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTCGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTCAA
CCTACTTCAAATACATTAAAGTCGGTAACGATACTGTCACTAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGCCGAGTCTAATAAAAAAGCTCAAGATGAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.188

100

0.643
  amiA3 Streptococcus thermophilus LMG 18311

64.036

100

0.641
  amiA Streptococcus salivarius strain HSISS4

63.07

100

0.631