Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q3V23_RS23705 Genome accession   NZ_CP130487
Coordinates   5273895..5274956 (+) Length   353 a.a.
NCBI ID   WP_106680046.1    Uniprot ID   A0ABW6U7F6
Organism   Streptomyces sp. VNUA116     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5268895..5279956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V23_RS23690 (Q3V23_23690) - 5270174..5271811 (+) 1638 WP_106680050.1 ABC transporter substrate-binding protein -
  Q3V23_RS23695 (Q3V23_23695) - 5271996..5272919 (+) 924 WP_223268203.1 ABC transporter permease -
  Q3V23_RS23700 (Q3V23_23700) - 5272952..5273881 (+) 930 WP_302864319.1 ABC transporter permease -
  Q3V23_RS23705 (Q3V23_23705) amiE 5273895..5274956 (+) 1062 WP_106680046.1 ABC transporter ATP-binding protein Regulator
  Q3V23_RS23710 (Q3V23_23710) amiE 5274949..5276025 (+) 1077 WP_302864323.1 ABC transporter ATP-binding protein Regulator
  Q3V23_RS23715 (Q3V23_23715) - 5276173..5277792 (+) 1620 WP_106680041.1 ABC transporter substrate-binding protein -
  Q3V23_RS23720 (Q3V23_23720) - 5277800..5278723 (+) 924 WP_106680039.1 ABC transporter permease -
  Q3V23_RS23725 (Q3V23_23725) - 5278716..5279705 (+) 990 WP_106680037.1 ABC transporter permease -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38287.16 Da        Isoelectric Point: 6.8276

>NTDB_id=782268 Q3V23_RS23705 WP_106680046.1 5273895..5274956(+) (amiE) [Streptomyces sp. VNUA116]
MTTTEKTEGAAGSAPQDAKKSAPLLDVRDLHVEFKTRDGVAKAVNGVSYSVDAGETLAVLGESGSGKSVTAQAIMGILDS
PPGRVAGGEILFHGQDILKLPESERRKLRGPKMAMIFQDALSALNPVFSVGNQLGEMFRVHQGMSKKDAKAKAIELMDRV
RIPAAKQRVNDYPHQFSGGMRQRIMIAMAMALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVA
DVADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDHKGQELYAIKGLPPNLLRIPTGCAFNPRCPKAQDVCR
ADIPALLPVTEQDGTELDGRGSACHFWKETIHG

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=782268 Q3V23_RS23705 WP_106680046.1 5273895..5274956(+) (amiE) [Streptomyces sp. VNUA116]
ATGACCACGACCGAAAAGACCGAAGGGGCGGCCGGCTCCGCGCCGCAGGACGCGAAGAAGTCCGCGCCCCTGCTCGACGT
GCGCGACCTGCACGTCGAGTTCAAGACCCGCGATGGCGTCGCCAAGGCCGTCAACGGTGTCAGCTACAGCGTCGACGCCG
GCGAGACCCTCGCCGTGCTCGGCGAGTCGGGATCCGGCAAGTCCGTCACCGCCCAGGCCATCATGGGCATCCTGGACTCG
CCCCCCGGGCGGGTGGCCGGCGGTGAGATCCTCTTCCACGGCCAGGACATCCTGAAGCTGCCGGAGAGCGAGCGGCGCAA
GCTGCGCGGCCCGAAGATGGCGATGATCTTCCAGGACGCCCTCTCCGCGCTCAACCCCGTCTTCTCCGTCGGCAACCAGC
TCGGCGAGATGTTCCGGGTGCACCAGGGCATGTCGAAGAAGGACGCCAAGGCCAAGGCGATCGAGCTGATGGACCGGGTG
CGCATCCCGGCCGCCAAGCAGCGCGTGAACGACTACCCGCACCAGTTCTCGGGCGGCATGCGCCAGCGCATCATGATCGC
GATGGCGATGGCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCGACCACGGCCCTCGACGTGACCGTCCAGGCCCAGG
TCATGGACCTGCTCGCGGAGCTGCAGCGCGAGTACAACATGGGCCTGATCCTGATCACGCACGACCTGGGCGTCGTCGCG
GACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGACCGCGCCCGTGCACGAGCTCTACAAGCGTCC
CGCCCACCCGTACACCCGGGGCCTGCTGGACTCGATCCCGCGCCTGGACCACAAGGGCCAGGAGCTCTACGCGATCAAGG
GTCTGCCGCCCAACCTCCTGCGGATCCCCACCGGCTGCGCCTTCAACCCGCGCTGCCCCAAGGCGCAGGACGTCTGCCGC
GCGGACATCCCCGCCCTGCTCCCGGTCACGGAGCAGGACGGCACCGAGCTCGACGGCCGCGGCAGCGCGTGCCACTTCTG
GAAGGAAACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(255-319)

ABC transporter (ABC_tran)

(45-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.351

83.853

0.431
  amiE Streptococcus thermophilus LMG 18311

50.853

83.003

0.422
  amiE Streptococcus thermophilus LMD-9

50.853

83.003

0.422
  oppD Streptococcus mutans UA159

46.429

87.252

0.405