Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   PO908_RS07940 Genome accession   NZ_CP117042
Coordinates   1532797..1534776 (-) Length   659 a.a.
NCBI ID   WP_394467941.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527797..1539776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS07920 (PO908_07895) amiF 1527988..1528911 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  PO908_RS07925 (PO908_07900) amiE 1528922..1529989 (-) 1068 WP_021002028.1 ABC transporter ATP-binding protein Regulator
  PO908_RS07930 (PO908_07905) amiD 1529998..1530924 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  PO908_RS07935 (PO908_07910) amiC 1530924..1532420 (-) 1497 WP_003026183.1 ABC transporter permease Regulator
  PO908_RS07940 (PO908_07915) amiA3 1532797..1534776 (-) 1980 WP_394467941.1 peptide ABC transporter substrate-binding protein Regulator
  PO908_RS07945 (PO908_07920) amiA3 1534974..1536950 (-) 1977 WP_021002030.1 peptide ABC transporter substrate-binding protein Regulator
  PO908_RS07950 (PO908_07925) - 1537116..1537799 (-) 684 WP_106079118.1 B3/4 domain-containing protein -
  PO908_RS07955 (PO908_07930) - 1538033..1539643 (-) 1611 WP_021002032.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73193.78 Da        Isoelectric Point: 8.3189

>NTDB_id=782268 PO908_RS07940 WP_394467941.1 1532797..1534776(-) (amiA3) [Streptococcus anginosus strain CGMH_KH1]
MKKSKIITLAALALLATGALAACSSSKTSSGNKTFSYIYEQDPNNLNYLTTGKAATANLTSNVIDGLLENDRYGNLVPSV
AKDWTVSKDGLTYTYTLRKGAKWYTSEGEEYAEVKAQDFVTGLKYAADNKSDAIYLVQDSVKGLDAYMKGENKDFSSVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSLLYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDNIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKILRNLFVPPTFVQTDDKSFGELVKEKLVGYNESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDIPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGENTKTYLGFDAGTNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQNQYKKAMEKWN
KKRTESNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=782268 PO908_RS07940 WP_394467941.1 1532797..1534776(-) (amiA3) [Streptococcus anginosus strain CGMH_KH1]
ATGAAGAAAAGTAAAATCATTACCCTTGCAGCGCTAGCCTTGCTTGCAACAGGAGCTCTAGCAGCTTGTTCTAGCTCTAA
AACAAGCTCGGGGAACAAAACATTCTCATATATTTATGAGCAAGATCCAAATAACCTGAACTATTTGACAACTGGGAAAG
CAGCTACTGCAAATCTTACCAGTAATGTCATTGACGGACTCTTGGAAAATGACCGTTACGGAAATCTAGTTCCTTCTGTA
GCGAAGGATTGGACAGTCTCCAAGGATGGCTTGACTTATACTTATACACTTCGTAAGGGTGCCAAATGGTACACATCAGA
GGGCGAAGAGTATGCAGAAGTTAAGGCACAAGACTTTGTGACAGGCTTAAAATATGCTGCGGATAATAAATCTGATGCTA
TTTACTTGGTGCAAGATTCTGTTAAAGGCTTGGATGCTTACATGAAGGGTGAAAATAAAGATTTCTCTTCTGTCGGTATC
AAAGCAGTTGATGATTACACGGTTCAATACACGCTTAATCGACCAGAAAGCTTTTGGAATTCTAAAACAACAATGGGCGT
TCTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCACAAGCAACAGACCCATCTAGTCTTCTTT
ATAATGGTCCATACTTGCTGAAATCTATCACAGCGAAATCGTCTGTTGAATTTGCTAAAAATCCAAACTACTGGGATAAG
AAGAATGTGCACATTGACAACATCAAGTTGTCCTACTATGATGGTCAAGACCAAGACAAACTTGCTAAAGGATTTAGTGA
TGGCTCATTTACCAATGCTAAAGTATTTCCAACTAGCCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACGACTTACTTAGTAGCTACAAATATTGATCGTCAATCTTACAATCACACTTCAAAGACA
ACAGATGCTCAAAAAACTTCTACTAAGAAAGCTTTGCTAAACAAGGATTTCCGTCAAGCGATTACCTTTGCATTTGACCG
CACTGCTTATGCATCACAGGTGAATGGTAAAGACGGTGCGACGAAGATACTCCGTAATCTTTTTGTACCGCCAACGTTTG
TTCAAACAGATGACAAAAGCTTTGGAGAATTAGTCAAAGAAAAATTAGTTGGTTATAATGAAAGTTGGAAAGATGTCAAC
TTAAATGATGCGCAAGATGGTCTTTACAATCCAACTAAAGCTAAAGAAAAATTAGCGAAAGCGAAAGCAGCGCTTCAAGC
AGACGGCGTTCAATTCCCAATCCACATTGATATTCCAGTTGACCAAACAGCGACTAATAAAGTTCAACGTGTGCAATCAT
TGAAACAATCTATTGAAAAAAATCTTGGTAAAGAAAATGTTGTGATTGATATTCAACAAATGTCTAAAGACGACGTGAAT
AATATCACTTACTTTGCTGAATCTGCAGCAGCAGAAGATTGGGACCTTTCTGATAATGTTGGTTGGAGTCCAGACTTCCA
AGACCCATCTACTTATCTTGATGTCATCAAACCTTCAAGTGGTGAAAACACTAAGACTTATCTAGGATTTGATGCAGGTA
CGAATAACGCTGCAGCAGCACAAGTTGGTATGAACGAATATGAAAAGTTGTTGAATGAAGCTGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCCCAAGCTTGGTTGACTGATAATGCTTTGGTTATTCCGACAACAACCTT
GACTGGTCGTCCAATTCTTTCTCGTACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAATATCTTGAACTCCAAGATGAGCCTGTGACTCAAAATCAATACAAGAAAGCAATGGAAAAATGGAAT
AAAAAGCGCACAGAATCTAATAAAAAGGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.061

100

0.612
  amiA3 Streptococcus thermophilus LMG 18311

60.455

100

0.605
  amiA Streptococcus salivarius strain HSISS4

60.152

100

0.602