Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   LYZ37_RS20045 Genome accession   NZ_CP117030
Coordinates   1018028..1020082 (-) Length   684 a.a.
NCBI ID   WP_272787318.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013028..1025082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS20030 (LYZ37_20030) clcA 1014093..1015493 (+) 1401 WP_171323259.1 H(+)/Cl(-) exchange transporter ClcA -
  LYZ37_RS20035 (LYZ37_20035) - 1015611..1016585 (+) 975 WP_272787316.1 TDT family transporter -
  LYZ37_RS20040 (LYZ37_20040) cqsA 1016791..1017972 (+) 1182 WP_272787317.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LYZ37_RS20045 (LYZ37_20045) cqsS 1018028..1020082 (-) 2055 WP_272787318.1 hybrid sensor histidine kinase/response regulator Regulator
  LYZ37_RS20050 (LYZ37_20050) - 1020279..1023326 (-) 3048 WP_272787319.1 AAA family ATPase -
  LYZ37_RS20055 (LYZ37_20055) - 1023335..1024465 (-) 1131 WP_272787320.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 684 a.a.        Molecular weight: 78615.58 Da        Isoelectric Point: 5.1243

>NTDB_id=782134 LYZ37_RS20045 WP_272787318.1 1018028..1020082(-) (cqsS) [Vibrio tubiashii strain FP17]
MNVVKKIYQYADPNLELVGWMGFFGFPAYFYIWSYMYPQPYENGPLRFFCAMLLLGLALRKYTPPLLKRYLPYYYLVTIT
ICLPFFFSFMMFMNEWSTVWAMSFMSSIFLHVLLVHETRIMLLQAMVAIVAAYLFSYGLEHAPAKVETEVVVIWPYIPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASVDVLDSSLPSIKTIKGDKAEIDKHDIERMKEVLS
GADEVIRNGNEAIDLLLTSIDQSRVSHSTFRSYSVEQITRESLASFSYPSDHAKEVVNLHVESDFDYFGSDTLLKYALYN
LLKNSLYYQNGEEFKIAISIRSDDEFNYLYFEDNGVGIEKDKLEFVFQDFYTSGKSSSYGLGLPFCKRVMQAFGGRIKCE
SVLGEWTRFTLKFPRYESPKVSSIKQEILRTKSMLYVGGDVAVKRKLNEFTFYTGALCDVVDFEQARGKEEFEFEYDLIL
LDLETCNEQEYLMLESKLHFTEAKIVMLFAQDGQYHNRFSRFLTFYPKEKAQFLLDVTQSVDALMFGNVEPNRNLIPKKA
PAVVGKRILIADDNESMRQLTTILLNKQGYQVSQAGDGNEVLSVLSSEQVDLILMDLEMPMLNGLETTTVIRESEEVYAN
VPILGHTGDNRKETLSKIEQVGMNGYLIKPVDKVKLLDKVADYI

Nucleotide


Download         Length: 2055 bp        

>NTDB_id=782134 LYZ37_RS20045 WP_272787318.1 1018028..1020082(-) (cqsS) [Vibrio tubiashii strain FP17]
ATGAATGTAGTAAAGAAGATTTATCAGTACGCAGATCCCAACCTTGAGTTAGTCGGGTGGATGGGCTTCTTCGGCTTTCC
TGCATACTTCTACATTTGGTCTTACATGTACCCGCAGCCCTATGAAAATGGGCCCTTGAGGTTTTTTTGCGCCATGCTGC
TGTTAGGGCTGGCGTTAAGAAAATATACGCCTCCTCTACTGAAACGGTATTTGCCTTATTACTACTTGGTGACAATCACC
ATCTGCCTACCGTTCTTTTTCTCGTTTATGATGTTTATGAATGAATGGTCGACAGTATGGGCAATGTCCTTCATGTCTTC
GATCTTTCTTCATGTGTTATTAGTCCATGAGACTCGTATTATGTTGCTGCAGGCAATGGTTGCCATTGTAGCGGCCTACT
TGTTTAGCTATGGGCTAGAGCACGCGCCTGCCAAAGTTGAGACTGAAGTGGTCGTCATTTGGCCTTACATTCCGATTTTC
TTGTTTACCTATGTGTTCGGTAATTTGTTCTATTTCCGCAACCAAGTGGAGCATGAATCGAAAGTCTCAATTGCCAAATC
ATTTGGCGCAGGTATCGCTCATGAAATGCGTAATCCGTTAAGCGCGCTTAAAGCATCGGTAGACGTACTCGACTCGTCTT
TACCTTCAATCAAGACGATTAAAGGAGACAAGGCAGAGATCGACAAGCATGATATTGAGCGCATGAAAGAGGTGCTTTCA
GGAGCGGATGAAGTCATACGCAATGGTAACGAAGCGATAGATTTATTGCTTACCTCCATTGACCAGAGTCGAGTATCACA
CTCAACGTTTCGATCTTATTCTGTAGAGCAGATTACAAGAGAATCACTGGCAAGTTTCTCTTATCCGAGCGATCACGCTA
AAGAAGTGGTGAATTTACATGTCGAAAGTGATTTTGACTACTTTGGTAGCGATACGTTATTGAAGTATGCGCTGTACAAC
TTGCTAAAGAACTCACTCTATTACCAGAATGGTGAAGAGTTTAAGATTGCGATTTCGATTAGGAGCGATGATGAGTTCAA
CTATCTCTACTTTGAAGATAACGGAGTAGGGATAGAGAAAGATAAGTTAGAGTTTGTCTTTCAAGATTTCTATACCTCAG
GAAAATCCTCAAGCTACGGGCTTGGGTTACCTTTTTGTAAACGTGTCATGCAAGCATTTGGCGGCAGAATAAAATGTGAG
TCGGTACTTGGAGAGTGGACACGCTTTACCCTTAAATTTCCTCGATATGAGTCCCCAAAAGTGTCCTCAATAAAACAAGA
AATTCTAAGAACCAAATCAATGCTTTATGTTGGTGGTGATGTAGCGGTAAAGCGTAAATTGAATGAGTTTACCTTCTACA
CAGGTGCGCTGTGTGATGTGGTCGATTTTGAGCAGGCTCGGGGGAAGGAAGAGTTCGAATTTGAGTACGATTTGATACTA
CTCGATCTAGAGACATGTAATGAGCAAGAGTATCTAATGTTGGAGTCTAAGCTCCACTTTACTGAAGCAAAAATCGTGAT
GCTTTTCGCTCAAGATGGCCAGTATCACAATCGATTCAGCCGTTTCCTTACATTCTATCCAAAAGAGAAAGCGCAATTTC
TGCTTGATGTCACTCAGTCGGTCGATGCGCTTATGTTTGGCAACGTTGAGCCTAATCGAAACCTCATTCCGAAAAAAGCA
CCTGCCGTGGTTGGTAAGCGTATCTTGATTGCCGATGACAATGAATCGATGAGGCAGTTAACCACTATCTTGCTCAACAA
GCAGGGTTACCAAGTTTCTCAGGCCGGAGATGGCAATGAAGTGTTGAGTGTTCTGAGCAGTGAACAGGTTGATTTGATAT
TGATGGACCTAGAAATGCCAATGCTTAATGGTTTAGAGACAACCACGGTGATTCGCGAGTCAGAGGAAGTCTATGCCAAC
GTACCGATATTAGGCCACACTGGTGATAATCGAAAAGAAACTTTATCCAAAATTGAACAAGTAGGCATGAATGGATACTT
AATTAAGCCTGTCGATAAAGTTAAATTACTTGATAAAGTCGCGGATTATATCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(568-680)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.564

100

0.499