Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LYZ37_RS20040 Genome accession   NZ_CP117030
Coordinates   1016791..1017972 (+) Length   393 a.a.
NCBI ID   WP_272787317.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1011791..1022972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS20025 (LYZ37_20025) - 1012693..1013673 (+) 981 WP_272787315.1 CobW family GTP-binding protein -
  LYZ37_RS20030 (LYZ37_20030) clcA 1014093..1015493 (+) 1401 WP_171323259.1 H(+)/Cl(-) exchange transporter ClcA -
  LYZ37_RS20035 (LYZ37_20035) - 1015611..1016585 (+) 975 WP_272787316.1 TDT family transporter -
  LYZ37_RS20040 (LYZ37_20040) cqsA 1016791..1017972 (+) 1182 WP_272787317.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LYZ37_RS20045 (LYZ37_20045) cqsS 1018028..1020082 (-) 2055 WP_272787318.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43745.93 Da        Isoelectric Point: 6.8715

>NTDB_id=782133 LYZ37_RS20040 WP_272787317.1 1016791..1017972(+) (cqsA) [Vibrio tubiashii strain FP17]
MNMLTTRSRLPEFIDRRINYYVSDLINKKDNGRNLVLGKKPHPGDIILQSNDYLALTHHPKIIDAQVNSLLSKKDTAFMS
NVFLHSDGLDKTVEHNLAEYTGFQTCTIAPSGWIANIGLLQTICDSQTNVYIDFFAHMSLWEGARIAGANIHPFMHNNAK
HLRRLIKRNGPGVVLIDSIYSTIGTIAPLQEMVALAKELDCAIVVDESHSVGVYGPKGAGLLQELGLTDQVDFMTASLAK
TFAYRAGAVWCNNLTGQVVPYVSFPSIFSSAMMSFELDRIDATLSVIKESDQSRRRLMECSEQVREGLANIGYNIRSESQ
IISLETAEKTNTRKVRDFFEDHGVFGSVFCTPATPDNKNILRLSLNSALSNSDIDKILSVAKKAYQNNELYFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=782133 LYZ37_RS20040 WP_272787317.1 1016791..1017972(+) (cqsA) [Vibrio tubiashii strain FP17]
ATGAATATGTTAACAACGCGATCTCGCCTGCCCGAGTTTATCGACAGACGAATCAACTACTATGTTTCTGACCTAATAAA
TAAAAAAGATAATGGTAGAAACCTAGTTTTAGGTAAGAAGCCGCACCCAGGTGATATCATTTTGCAAAGCAATGACTACC
TTGCCCTAACCCATCACCCTAAAATCATAGACGCTCAAGTTAATTCATTGCTCTCCAAGAAAGACACGGCATTTATGTCT
AATGTGTTTTTGCACAGTGATGGACTAGATAAAACGGTTGAGCACAATCTTGCAGAATACACTGGGTTTCAAACTTGTAC
CATTGCCCCATCGGGTTGGATTGCCAACATCGGCCTACTTCAAACCATCTGTGATTCACAAACCAATGTGTACATCGACT
TCTTTGCCCATATGTCACTTTGGGAAGGGGCTCGCATTGCAGGTGCCAATATCCACCCCTTTATGCATAACAATGCCAAG
CACCTTAGACGTTTAATCAAACGTAATGGTCCAGGTGTGGTTTTAATCGACTCCATATACAGTACGATTGGCACCATTGC
ACCGCTTCAGGAAATGGTCGCTTTAGCCAAAGAGCTAGATTGTGCGATAGTGGTCGATGAGTCCCACTCGGTCGGTGTTT
ACGGCCCTAAAGGTGCCGGATTGCTTCAAGAGCTCGGCCTCACTGATCAAGTCGACTTCATGACAGCCAGCCTAGCAAAA
ACATTTGCTTATCGCGCTGGTGCAGTATGGTGTAATAACTTAACTGGTCAAGTAGTCCCATACGTTTCATTTCCTTCCAT
CTTCAGCTCAGCCATGATGTCGTTCGAGCTAGATAGAATCGATGCCACATTAAGTGTCATTAAGGAAAGTGATCAATCCC
GCAGGCGTCTTATGGAGTGTTCAGAGCAAGTCCGTGAAGGTCTAGCGAATATTGGCTATAACATTCGTAGTGAATCTCAG
ATAATTAGCTTAGAAACCGCTGAAAAAACCAATACACGTAAGGTAAGAGATTTTTTTGAAGACCACGGCGTATTCGGTTC
TGTTTTCTGTACACCAGCCACGCCAGATAATAAAAACATCTTACGTTTATCTTTAAATAGCGCTTTATCTAATAGTGATA
TTGATAAGATTTTATCGGTAGCAAAGAAAGCCTACCAAAATAACGAACTTTATTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.959

98.219

0.55