Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LYZ37_RS02245 Genome accession   NZ_CP117029
Coordinates   463253..463873 (-) Length   206 a.a.
NCBI ID   WP_272786287.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 458253..468873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS02235 (LYZ37_02235) aceF 459547..461436 (+) 1890 WP_272786285.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  LYZ37_RS02240 (LYZ37_02240) lpdA 461705..463132 (+) 1428 WP_272786286.1 dihydrolipoyl dehydrogenase -
  LYZ37_RS02245 (LYZ37_02245) opaR 463253..463873 (-) 621 WP_272786287.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  LYZ37_RS02250 (LYZ37_02250) hpt 464442..464972 (+) 531 WP_004742615.1 hypoxanthine phosphoribosyltransferase -
  LYZ37_RS02255 (LYZ37_02255) can 465053..465721 (-) 669 WP_272786288.1 carbonate dehydratase -
  LYZ37_RS02260 (LYZ37_02260) - 466137..467807 (+) 1671 WP_004742617.1 SulP family inorganic anion transporter -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23811.14 Da        Isoelectric Point: 5.9430

>NTDB_id=782103 LYZ37_RS02245 WP_272786287.1 463253..463873(-) (opaR) [Vibrio tubiashii strain FP17]
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLNNLTSAMVELVLNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFVKAIERGEVCEEHEPA
ELATLFHGIFYSLFVQANRTQDEDGMKKLTESYLNMLCIYKHAKNA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=782103 LYZ37_RS02245 WP_272786287.1 463253..463873(-) (opaR) [Vibrio tubiashii strain FP17]
ATGGACTCAATTGCTAAAAGACCGCGTACGCGTCTTTCACCGCAAAAACGAAAACAGCAACTAATGGAAATCGCACTGGA
AGTGTTCGCTCGTCGTGGTATCGGCCGCGGTGGTCACGCTGACATCGCAGAAATTGCGCAGGTTTCTGTGGCTACTGTCT
TCAACTACTTCCCTACTCGCGAAGATCTGGTCGATGACGTGCTTAACTACGTTGTTCGTCAATTCTCAAACTTCCTATCA
GACAATATCGATTTAGATATTCACGCGAAAGAGAACTTAAACAATCTAACTTCAGCAATGGTTGAACTGGTACTTAACGA
CTGCCACTGGCTTAAAGTGTGGTTCGAGTGGAGTGCATCAACCCGTGATGAAGTATGGCCACTGTTTGTTTCAACAAACC
GTACTAACCAACTCTTGGTGCAGAATATGTTTGTTAAGGCCATTGAACGTGGTGAAGTGTGTGAAGAGCATGAGCCTGCT
GAGCTAGCAACTCTGTTCCACGGTATCTTCTACTCACTGTTTGTGCAAGCAAACCGTACTCAAGATGAAGACGGCATGAA
GAAGCTAACTGAAAGCTACTTAAACATGCTGTGCATCTACAAGCACGCGAAAAACGCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

84.5

97.087

0.82
  hapR Vibrio cholerae C6706

77

97.087

0.748
  hapR Vibrio cholerae strain A1552

77

97.087

0.748