Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | PPK11_RS06065 | Genome accession | NZ_CP117024 |
| Coordinates | 1280290..1280865 (+) | Length | 191 a.a. |
| NCBI ID | WP_273896773.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 444A6 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1275290..1285865
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PPK11_RS06040 | uvrD | 1275981..1278026 (+) | 2046 | WP_273896749.1 | DNA helicase UvrD | - |
| PPK11_RS06045 | flgA | 1278023..1278679 (+) | 657 | WP_273896751.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| PPK11_RS06050 | - | 1278689..1279252 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| PPK11_RS06055 | coaD | 1279252..1279725 (+) | 474 | WP_001169242.1 | pantetheine-phosphate adenylyltransferase | - |
| PPK11_RS06060 | tmk | 1279727..1280302 (+) | 576 | WP_273896770.1 | dTMP kinase | - |
| PPK11_RS06065 | comFC | 1280290..1280865 (+) | 576 | WP_273896773.1 | ComF family protein | Machinery gene |
| PPK11_RS06070 | - | 1280899..1282935 (+) | 2037 | WP_273896774.1 | N-6 DNA methylase | - |
| PPK11_RS06075 | - | 1282932..1284185 (+) | 1254 | WP_273896776.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21252.72 Da Isoelectric Point: 8.4513
>NTDB_id=782080 PPK11_RS06065 WP_273896773.1 1280290..1280865(+) (comFC) [Helicobacter pylori strain 444A6]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=782080 PPK11_RS06065 WP_273896773.1 1280290..1280865(+) (comFC) [Helicobacter pylori strain 444A6]
ATGCGTTGTTTAACTTGCTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAGGCCGGCGCGGAATTTGTGAGAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCTAACAACCCACGGGATTTCACTTTCAAGGGCGATGAAAGTTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGTGCGGACGAATGA
ATGCGTTGTTTAACTTGCTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAGGCCGGCGCGGAATTTGTGAGAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCTAACAACCCACGGGATTTCACTTTCAAGGGCGATGAAAGTTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGTGCGGACGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |