Detailed information NTG0781802

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: Q2B68_RS14505
• Genome accession: NZ_CP130280
• Coordinates: 2928756..2930018 (-)
• Length: 420 a.a.
• NCBI ID: WP_003152620.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain PM415
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2923756..2935018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q2B68_RS14490 (Q2B68_14490)	yihA	2923840..2924427 (-)	588	WP_003152626.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
Q2B68_RS14495 (Q2B68_14495)	lon	2924424..2926748 (-)	2325	WP_052827698.1	endopeptidase La	-
Q2B68_RS14500 (Q2B68_14500)	lonB	2926948..2928606 (-)	1659	WP_003152622.1	ATP-dependent protease LonB	-
Q2B68_RS14505 (Q2B68_14505)	clpX	2928756..2930018 (-)	1263	WP_003152620.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
Q2B68_RS14510 (Q2B68_14510)	tig	2930290..2931564 (-)	1275	WP_302564966.1	trigger factor	-
Q2B68_RS14515 (Q2B68_14515)	ddcA	2931781..2932785 (-)	1005	WP_024085662.1	DNA damage checkpoint antagonist DdcA	-
Q2B68_RS14520 (Q2B68_14520)	leuD	2932904..2933503 (-)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
Q2B68_RS14525 (Q2B68_14525)	leuC	2933519..2934937 (-)	1419	WP_003152606.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46188.97 Da
• Isoelectric Point: 4.5163

>NTDB_id=781802 Q2B68_RS14505 WP_003152620.1 2928756..2930018(-) (clpX) [Bacillus amyloliquefaciens strain PM415]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEGEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=781802 Q2B68_RS14505 WP_003152620.1 2928756..2930018(-) (clpX) [Bacillus amyloliquefaciens strain PM415]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTTGGTACGGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAATTCCAACAGTAAAGTGGATGATGTTGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTTCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGCATTATCTATATCGATGAAATCGATAAAGTAGC
GCGAAAATCTGAAAACCCGTCCATTACACGCGATGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCCAGATCGATACGACGAACATT
CTGTTCATTTGCGGCGGTGCATTTGACGGCATCGAACAAATCATCAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCTGATAATAAAGCGGCAGACCTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACCTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGGCGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCGCCGCGTCTTGTATTAAAAGACGGCACTGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569