Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   M0P28_RS06815 Genome accession   NZ_CP116958
Coordinates   1326918..1328147 (-) Length   409 a.a.
NCBI ID   WP_003065195.1    Uniprot ID   A0AAW6Y801
Organism   Streptococcus pasteurianus strain WUSP074     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321918..1333147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS06790 (M0P28_06790) - 1322239..1324347 (+) 2109 WP_048791464.1 AAA family ATPase -
  M0P28_RS06795 (M0P28_06795) - 1324453..1325100 (+) 648 WP_048791465.1 endonuclease III domain-containing protein -
  M0P28_RS06800 (M0P28_06800) - 1325209..1325877 (+) 669 WP_048791487.1 YoaK family protein -
  M0P28_RS06805 (M0P28_06805) - 1325967..1326182 (-) 216 WP_082144682.1 GyrI-like domain-containing protein -
  M0P28_RS06810 (M0P28_06810) yihA 1326314..1326910 (-) 597 WP_048791466.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  M0P28_RS06815 (M0P28_06815) clpX 1326918..1328147 (-) 1230 WP_003065195.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  M0P28_RS06820 (M0P28_06820) - 1328180..1328350 (-) 171 WP_003065196.1 hypothetical protein -
  M0P28_RS06825 (M0P28_06825) - 1328366..1328860 (-) 495 WP_117479592.1 dihydrofolate reductase -
  M0P28_RS06830 (M0P28_06830) - 1328948..1329787 (-) 840 WP_048791468.1 thymidylate synthase -
  M0P28_RS06835 (M0P28_06835) - 1330107..1331285 (+) 1179 WP_048791469.1 hydroxymethylglutaryl-CoA synthase -
  M0P28_RS06840 (M0P28_06840) - 1331260..1332543 (+) 1284 WP_048791470.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45140.74 Da        Isoelectric Point: 4.5644

>NTDB_id=781696 M0P28_RS06815 WP_003065195.1 1326918..1328147(-) (clpX) [Streptococcus pasteurianus strain WUSP074]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQDR
AKRALAVAVYNHYKRVSFAESRNEEDVDLQKSNILMIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSQEEVTKVRVTKAAVEG
KDKPILEIA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=781696 M0P28_RS06815 WP_003065195.1 1326918..1328147(-) (clpX) [Streptococcus pasteurianus strain WUSP074]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTCTGTGGAAAAAGCCAAGATGAAGTGAAAAAAATCAT
TGCAGGAAACAATGTTTTTATCTGTAATGAGTGCGTGGCTTTGTCACAAGAAATTATCAAAGAAGAACTTGCTGAAGAAG
TTCTTGCAGATTTAGCGGAAGTTCCAAAACCTAAAGAGTTGTTAGCAACTCTTGACGAATATGTCGTTGGTCAAGACCGT
GCCAAACGCGCGCTTGCCGTAGCTGTTTATAACCATTACAAACGTGTTTCTTTTGCGGAAAGTCGCAACGAAGAAGATGT
TGATTTGCAAAAATCAAACATTTTGATGATTGGTCCTACAGGTTCAGGAAAAACATTCCTAGCTCAAACTTTGGCTAAAA
CATTGAATGTACCGTTTGCGATTGCTGATGCGACATCATTGACAGAAGCAGGATACGTTGGTGAAGATGTTGAAAATATC
CTTTTGAAATTAATTCAAGCAGCTGATTTTAATATCGAACGCGCAGAACGCGGTATCATTTACGTGGACGAAATTGATAA
AATCGCTAAAAAAGGCGAAAATGTCTCAATTACACGTGATGTTTCAGGTGAAGGTGTTCAACAAGCACTTCTTAAAATCA
TTGAAGGAACAGTTGCTAGCGTACCACCTCAAGGTGGACGTAAGCACCCTAACCAAGAAATGATTCAAATTGATACTAAA
AATATCCTATTCATTGTCGGCGGTGCTTTTGATGGTATCGAGGATATTGTCAAACAACGTTTAGGTGAAAAGGTTATCGG
TTTTGGCCAAAATAACCGTAAAATTGATGAAAATGCTTCTTATATGCAAGAAATCATTTCAGAAGATATTCAAAAATTTG
GCTTGATTCCAGAGTTTATCGGACGTTTGCCAGTTGTAGCGGCACTTGAACAGTTGACGGCTGATGATTTGGTTCGTATC
TTGACAGAACCACGTAATGCCTTGGTTAAACAATATCAAACACTATTATCATATGACGGTGTTGAACTAGAATTTGATAA
AGATGCTTTGCAAGCTATTGCTAACAAAGCCATTGAACGTAAGACAGGAGCTCGTGGTTTACGCTCAATTATTGAGGAAA
CTATGATGGATATCATGTTTGAAATTCCTAGCCAAGAAGAAGTGACCAAGGTTCGTGTCACTAAAGCGGCTGTTGAAGGC
AAAGATAAACCAATTTTGGAAATTGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.731

100

0.897
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.354

98.044

0.572