Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   Q0Y58_RS16160 Genome accession   NZ_CP129997
Coordinates   2855610..2855939 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain PA1045     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2850610..2860939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0Y58_RS16145 - 2851339..2852283 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  Q0Y58_RS16150 - 2852384..2853409 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  Q0Y58_RS16155 - 2853422..2855419 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  Q0Y58_RS16160 comEA/comE1 2855610..2855939 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  Q0Y58_RS16170 - 2856156..2857352 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  Q0Y58_RS16175 uvrB 2857540..2859552 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=781641 Q0Y58_RS16160 WP_003138486.1 2855610..2855939(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA1045]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=781641 Q0Y58_RS16160 WP_003138486.1 2855610..2855939(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA1045]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385