Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   M0P24_RS08975 Genome accession   NZ_CP116957
Coordinates   1764995..1766041 (-) Length   348 a.a.
NCBI ID   WP_117508830.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759995..1771041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS08970 (M0P24_08970) amiF 1764066..1764995 (-) 930 WP_117508829.1 ABC transporter ATP-binding protein Regulator
  M0P24_RS08975 (M0P24_08975) oppD 1764995..1766041 (-) 1047 WP_117508830.1 ABC transporter ATP-binding protein Regulator
  M0P24_RS08980 (M0P24_08980) - 1766053..1767084 (-) 1032 WP_013851463.1 ABC transporter permease -
  M0P24_RS08985 (M0P24_08985) - 1767095..1768009 (-) 915 WP_003063307.1 ABC transporter permease -
  M0P24_RS08990 (M0P24_08990) - 1768119..1769774 (-) 1656 WP_013851462.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38678.29 Da        Isoelectric Point: 4.7594

>NTDB_id=781638 M0P24_RS08975 WP_117508830.1 1764995..1766041(-) (oppD) [Streptococcus pasteurianus strain WUSP070]
MTEETILQVKNLRVDFHTYAGEIKAIRDVSFDLKEGETLAIVGESGSGKSVTTKTLMGLSASNAEVTGDIDFKGKRLIEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKEEALKRALELMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDILIADEPTTALDVTIQAQILNLMKQIQKERGSSIVFITHDLGVVAGMADRVAVMYAGKIIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHFAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=781638 M0P24_RS08975 WP_117508830.1 1764995..1766041(-) (oppD) [Streptococcus pasteurianus strain WUSP070]
ATGACTGAAGAAACAATTTTACAAGTTAAAAACCTCCGTGTAGATTTCCATACCTATGCTGGGGAAATTAAAGCTATTCG
TGATGTCAGCTTTGACTTAAAAGAAGGCGAAACGCTTGCCATTGTTGGTGAGTCAGGTTCAGGTAAATCTGTAACAACAA
AAACGTTGATGGGCTTGTCAGCTTCAAATGCAGAAGTTACAGGAGACATCGATTTTAAAGGTAAAAGATTAATAGAATTA
AAAGAAGACGAATGGATTAAGGTTCGTGGAAATGAAATTGCAATGATTTTCCAAGACCCTATGACAAGTCTTGATCCAAC
AATGAAAATTGGTCAACAAATTGCTGAACCAATTATGATTCATGAAAAAGTTTCTAAAGAAGAAGCTTTAAAACGTGCTT
TGGAACTCATGAAAAATGTTGGTATTCCAAACGCAGAAGAACATATTAATGATTATCCGCACCAATGGTCAGGTGGTATG
CGTCAACGTGCTGTTATTGCGATTGCCTTGGCAGCAAACCCAGATATTTTGATTGCTGATGAACCTACAACAGCCTTGGA
CGTAACCATTCAAGCACAAATTTTGAATTTGATGAAACAAATTCAAAAAGAACGTGGTTCGTCAATCGTCTTTATCACAC
ATGACCTTGGTGTTGTTGCGGGCATGGCTGATCGTGTTGCCGTTATGTATGCTGGTAAGATTATTGAATATGGAACAGTA
GATGAAGTATTCTATAACCCACAACATCCATATACTTGGGGGCTTTTGAATTCAATGCCAACAACAGATACTGAAGCAGG
AAGTCTTCAATCTATCCCAGGTACACCGCCAGATCTCCTCAATCCACCAAAAGGTGATGCTTTTGCACCACGTAATGAGT
TTGCTTTAGATATTGACTACGAGGAAGAACCACCCATGTTTAAAGTTAGTGATACGCATTTTGCAGCTACATGGTTGTTA
GATGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.403

99.713

0.802
  amiE Streptococcus salivarius strain HSISS4

58.876

97.126

0.572
  amiE Streptococcus thermophilus LMG 18311

58.58

97.126

0.569
  amiE Streptococcus thermophilus LMD-9

58.58

97.126

0.569