Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   M0P24_RS08970 Genome accession   NZ_CP116957
Coordinates   1764066..1764995 (-) Length   309 a.a.
NCBI ID   WP_117508829.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759066..1769995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS08970 (M0P24_08970) amiF 1764066..1764995 (-) 930 WP_117508829.1 ABC transporter ATP-binding protein Regulator
  M0P24_RS08975 (M0P24_08975) oppD 1764995..1766041 (-) 1047 WP_117508830.1 ABC transporter ATP-binding protein Regulator
  M0P24_RS08980 (M0P24_08980) - 1766053..1767084 (-) 1032 WP_013851463.1 ABC transporter permease -
  M0P24_RS08985 (M0P24_08985) - 1767095..1768009 (-) 915 WP_003063307.1 ABC transporter permease -
  M0P24_RS08990 (M0P24_08990) - 1768119..1769774 (-) 1656 WP_013851462.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35009.82 Da        Isoelectric Point: 5.7994

>NTDB_id=781637 M0P24_RS08970 WP_117508829.1 1764066..1764995(-) (amiF) [Streptococcus pasteurianus strain WUSP070]
MTENRKKLVELKNVSLTFNEGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINKGEIDFDGETISHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLNIHKLVSSKEERDQKVQDLLALVGLNKDHSTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLTAIPEPDPESERNRIHEEYDPSVELDGQPREMREITPGHFVLCTEAEAEAYKKEL

Nucleotide


Download         Length: 930 bp        

>NTDB_id=781637 M0P24_RS08970 WP_117508829.1 1764066..1764995(-) (amiF) [Streptococcus pasteurianus strain WUSP070]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCATTGACTTTTAACGAAGGTAAAAAGAACGAAGTAAA
AGCTATTGATAATATCAGTTTTGATATTTACGAAGGTGAAGTTTTCGGTCTTGTTGGAGAATCAGGTTCTGGTAAGACAA
CCGTTGGTCGTGCTATTTTGAAATTGTATGACATTAATAAAGGTGAAATTGATTTTGATGGTGAAACTATCTCTCACCTT
AAAGGGAAAGAATTGCACGAATTCCGTAAAAATGCTCAAATGATTTTCCAAGACCCACAAGCTAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCGGAAGGACTTAACATCCATAAATTAGTTAGCAGTAAAGAAGAGCGTGACCAAAAAGTTC
AAGATTTACTTGCTTTAGTTGGACTTAACAAAGACCATTCAACACGCTATCCACATGAATTTTCAGGTGGACAACGTCAA
CGTATTGGTATCGCTCGTGCTCTTGCCGTTGAACCAAAGTTCATCATTGCCGATGAACCAATTTCAGCCCTTGACGTGTC
AATCCAAGCTCAAGTTGTTAACCTTATGCAAAAACTTCAAAGAGAACAGGGTTTAACATATCTCTTTATCGCTCACGATT
TGTCAATGGTTAAATACATCTCAGATCGTATTGGGGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGATGAT
GTTTATAATCATCCAATTCACCCATATACTAAGAGCTTGTTGACTGCAATTCCAGAACCAGACCCAGAGTCTGAAAGAAA
TCGTATCCATGAAGAGTACGATCCAAGTGTAGAACTAGATGGCCAACCACGTGAAATGCGTGAAATTACACCTGGACACT
TTGTTCTTTGTACAGAAGCAGAAGCAGAAGCTTATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-272)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.754

98.706

0.54
  amiF Streptococcus salivarius strain HSISS4

54.754

98.706

0.54
  amiF Streptococcus thermophilus LMG 18311

54.426

98.706

0.537