Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   M0P24_RS04040 Genome accession   NZ_CP116957
Coordinates   797219..798448 (+) Length   409 a.a.
NCBI ID   WP_003065195.1    Uniprot ID   A0AAW6Y801
Organism   Streptococcus pasteurianus strain WUSP070     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 792219..803448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS04015 (M0P24_04015) - 792822..794105 (-) 1284 WP_003065200.1 hydroxymethylglutaryl-CoA reductase, degradative -
  M0P24_RS04020 (M0P24_04020) - 794080..795258 (-) 1179 WP_003065199.1 hydroxymethylglutaryl-CoA synthase -
  M0P24_RS04025 (M0P24_04025) - 795579..796418 (+) 840 WP_013851952.1 thymidylate synthase -
  M0P24_RS04030 (M0P24_04030) - 796506..797000 (+) 495 WP_058692217.1 dihydrofolate reductase -
  M0P24_RS04035 (M0P24_04035) - 797016..797186 (+) 171 WP_003065196.1 hypothetical protein -
  M0P24_RS04040 (M0P24_04040) clpX 797219..798448 (+) 1230 WP_003065195.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  M0P24_RS04045 (M0P24_04045) yihA 798459..799052 (+) 594 WP_013851951.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  M0P24_RS04050 (M0P24_04050) - 799184..799399 (+) 216 WP_080543611.1 GyrI-like domain-containing protein -
  M0P24_RS04055 (M0P24_04055) - 799481..800149 (-) 669 WP_003065192.1 YoaK family protein -
  M0P24_RS04060 (M0P24_04060) - 800258..800905 (-) 648 WP_111718241.1 endonuclease III domain-containing protein -
  M0P24_RS04065 (M0P24_04065) - 801011..803119 (-) 2109 WP_013851949.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45140.74 Da        Isoelectric Point: 4.5644

>NTDB_id=781618 M0P24_RS04040 WP_003065195.1 797219..798448(+) (clpX) [Streptococcus pasteurianus strain WUSP070]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQDR
AKRALAVAVYNHYKRVSFAESRNEEDVDLQKSNILMIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSQEEVTKVRVTKAAVEG
KDKPILEIA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=781618 M0P24_RS04040 WP_003065195.1 797219..798448(+) (clpX) [Streptococcus pasteurianus strain WUSP070]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTCTGTGGAAAAAGCCAAGATGAAGTAAAAAAAATCAT
TGCAGGAAACAATGTTTTTATCTGTAATGAGTGCGTGGCTTTGTCACAAGAAATTATCAAAGAAGAACTTGCTGAAGAAG
TTCTTGCAGATTTAGCGGAAGTTCCAAAACCTAAAGAGTTGTTAGCAACTCTTGACGAATATGTCGTTGGTCAAGACCGT
GCCAAACGCGCGCTTGCCGTAGCTGTTTATAACCATTACAAACGTGTTTCTTTTGCGGAAAGTCGCAACGAAGAAGATGT
TGATTTGCAAAAATCAAACATTTTGATGATTGGTCCTACAGGTTCAGGAAAAACATTCTTAGCTCAAACTTTGGCTAAAA
CATTGAATGTACCGTTTGCGATTGCTGATGCGACATCATTGACAGAAGCAGGATACGTTGGTGAAGATGTTGAAAATATC
CTTTTGAAATTAATTCAAGCAGCTGATTTTAATATCGAACGCGCAGAACGCGGTATTATTTACGTGGACGAAATTGATAA
AATCGCTAAAAAAGGCGAAAATGTCTCAATTACACGTGATGTTTCAGGTGAAGGTGTTCAACAAGCACTTCTTAAAATCA
TTGAAGGAACAGTTGCTAGCGTACCACCTCAAGGTGGACGTAAGCACCCTAACCAAGAAATGATTCAAATTGATACTAAA
AATATCCTATTCATTGTCGGCGGTGCTTTTGATGGTATCGAGGATATTGTCAAACAACGTTTAGGTGAAAAGGTTATCGG
TTTTGGCCAAAATAACCGTAAAATTGATGAAAATGCTTCTTATATGCAAGAAATCATTTCAGAAGATATTCAAAAATTTG
GCTTGATTCCAGAGTTTATCGGACGTTTGCCAGTTGTAGCGGCACTTGAACAGTTGACGGCTGATGATTTGGTTCGTATC
TTGACAGAACCACGTAATGCCTTGGTTAAACAATATCAAACGCTATTATCATATGACGGTGTTGAACTAGAATTTGATAA
AGATGCTTTGCAAGCTATTGCTAACAAAGCCATTGAACGTAAGACAGGAGCTCGTGGTTTACGCTCAATTATTGAGGAAA
CTATGATGGATATCATGTTTGAAATTCCTAGCCAAGAAGAAGTGACCAAGGTTCGTGTCACTAAAGCGGCTGTTGAAGGC
AAAGATAAACCAATTTTGGAAATTGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.731

100

0.897
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.354

98.044

0.572