Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M0P24_RS00815 Genome accession   NZ_CP116957
Coordinates   164624..165139 (+) Length   171 a.a.
NCBI ID   WP_003066357.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 159624..170139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS00790 (M0P24_00790) ahpC 160219..160779 (+) 561 WP_003066370.1 alkyl hydroperoxide reductase subunit C -
  M0P24_RS00795 (M0P24_00795) ahpF 160791..162329 (+) 1539 WP_248497905.1 alkyl hydroperoxide reductase subunit F -
  M0P24_RS11720 - 162606..163238 (+) 633 Protein_158 biotin synthase BioB -
  M0P24_RS11725 - 163236..163439 (+) 204 WP_338000510.1 biotin transporter BioY -
  M0P24_RS00805 (M0P24_00805) - 163933..164079 (+) 147 WP_247909243.1 ATP-dependent protease -
  M0P24_RS00810 (M0P24_00810) rpsF 164322..164612 (+) 291 WP_003066359.1 30S ribosomal protein S6 -
  M0P24_RS00815 (M0P24_00815) ssbA 164624..165139 (+) 516 WP_003066357.1 single-stranded DNA-binding protein Machinery gene
  M0P24_RS00820 (M0P24_00820) rpsR 165200..165439 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  M0P24_RS00825 (M0P24_00825) - 165573..166097 (+) 525 WP_248497906.1 DUF2975 domain-containing protein -
  M0P24_RS00830 (M0P24_00830) - 166100..166309 (+) 210 WP_009854897.1 helix-turn-helix domain-containing protein -
  M0P24_RS00835 (M0P24_00835) - 166328..166759 (+) 432 WP_058692479.1 hypothetical protein -
  M0P24_RS00840 (M0P24_00840) - 166804..167460 (-) 657 WP_013852223.1 DUF1129 domain-containing protein -
  M0P24_RS00845 (M0P24_00845) - 167763..168707 (-) 945 WP_003066347.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18919.49 Da        Isoelectric Point: 4.7187

>NTDB_id=781605 M0P24_RS00815 WP_003066357.1 164624..165139(+) (ssbA) [Streptococcus pasteurianus strain WUSP070]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADNFQILESRATREGQSGGSYNGGFNNNNSSFGGSSNDGGFSSQSSQSQTPNFGRDESPFGNSN
PMDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=781605 M0P24_RS00815 WP_003066357.1 164624..165139(+) (ssbA) [Streptococcus pasteurianus strain WUSP070]
ATGATTAATAATGTAGTACTTGTCGGTCGTATGACTCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCTGTTGC
CACATTTACACTTGCTGTAAATCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAATTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAGATTGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCATATAACGGTGGATTCAACAATAACAATTCATCATTTGGTGGTTCATCAAACG
ATGGTGGTTTCTCATCACAATCTTCACAATCACAAACACCTAACTTTGGTCGCGATGAAAGCCCATTTGGCAATTCAAAT
CCAATGGACATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.222

100

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.596