Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OT343_RS03035 Genome accession   NZ_CP116955
Coordinates   581809..582582 (+) Length   257 a.a.
NCBI ID   WP_002859984.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN122719     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 576809..587582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT343_RS03020 (OT343_03010) - 577658..579592 (-) 1935 WP_100620537.1 ribonuclease R family protein -
  OT343_RS03025 (OT343_03015) ilvC 579711..580733 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  OT343_RS03030 (OT343_03020) - 580737..581819 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  OT343_RS03035 (OT343_03025) dprA 581809..582582 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  OT343_RS03040 (OT343_03030) ruvX 582579..582962 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  OT343_RS03045 (OT343_03035) - 582991..583830 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  OT343_RS03050 (OT343_03040) msrA 584006..584503 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  OT343_RS03055 (OT343_03045) ppa 584545..585063 (-) 519 WP_002867724.1 inorganic diphosphatase -
  OT343_RS03060 (OT343_03050) - 585073..585651 (-) 579 WP_002859580.1 adenylate kinase -
  OT343_RS03065 (OT343_03055) aspS 585648..587399 (-) 1752 WP_002908827.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.61 Da        Isoelectric Point: 6.4874

>NTDB_id=781583 OT343_RS03035 WP_002859984.1 581809..582582(+) (dprA) [Campylobacter sp. CFSAN122719]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=781583 OT343_RS03035 WP_002859984.1 581809..582582(+) (dprA) [Campylobacter sp. CFSAN122719]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459