Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   OT343_RS02840 Genome accession   NZ_CP116955
Coordinates   537045..537695 (-) Length   216 a.a.
NCBI ID   WP_002886738.1    Uniprot ID   A0AB36G702
Organism   Campylobacter sp. CFSAN122719     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 532045..542695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT343_RS02805 (OT343_02795) - 532423..533427 (+) 1005 WP_011049741.1 membrane protein -
  OT343_RS02810 (OT343_02800) - 533424..534185 (+) 762 WP_002870073.1 TlyA family RNA methyltransferase -
  OT343_RS02815 (OT343_02805) - 534151..535005 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  OT343_RS02820 (OT343_02810) cmoA 534992..535702 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  OT343_RS02825 (OT343_02815) - 535692..535913 (-) 222 WP_002859102.1 EexN family lipoprotein -
  OT343_RS02830 (OT343_02820) - 535910..536344 (-) 435 WP_002870071.1 EexN family lipoprotein -
  OT343_RS02835 (OT343_02825) - 536402..537034 (-) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  OT343_RS02840 (OT343_02830) CJE0566 537045..537695 (-) 651 WP_002886738.1 DNA/RNA non-specific endonuclease Regulator
  OT343_RS02845 (OT343_02835) nth 537692..538318 (-) 627 WP_002852225.1 endonuclease III -
  OT343_RS02850 (OT343_02840) peb4 538399..539220 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  OT343_RS02855 (OT343_02845) fbaA 539220..540284 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  OT343_RS02860 (OT343_02850) - 540379..541821 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.13 Da        Isoelectric Point: 9.6573

>NTDB_id=781582 OT343_RS02840 WP_002886738.1 537045..537695(-) (CJE0566) [Campylobacter sp. CFSAN122719]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=781582 OT343_RS02840 WP_002886738.1 537045..537695(-) (CJE0566) [Campylobacter sp. CFSAN122719]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAGCCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63