Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OT390_RS03335 Genome accession   NZ_CP116953
Coordinates   629532..630305 (+) Length   257 a.a.
NCBI ID   WP_394535924.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN122748     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 624532..635305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT390_RS03320 (OT390_03310) - 625399..627333 (-) 1935 WP_052774572.1 ribonuclease R family protein -
  OT390_RS03325 (OT390_03315) ilvC 627452..628474 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  OT390_RS03330 (OT390_03320) - 628478..629542 (+) 1065 WP_394535925.1 divergent polysaccharide deacetylase family protein -
  OT390_RS03335 (OT390_03325) dprA 629532..630305 (+) 774 WP_394535924.1 DNA-processing protein DprA Machinery gene
  OT390_RS03340 (OT390_03330) ruvX 630302..630685 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  OT390_RS03345 (OT390_03335) - 630714..631553 (+) 840 WP_394535937.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  OT390_RS03350 (OT390_03340) msrA 631729..632226 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  OT390_RS03355 (OT390_03345) ppa 632267..632785 (-) 519 WP_002867724.1 inorganic diphosphatase -
  OT390_RS03360 (OT390_03350) - 632795..633373 (-) 579 WP_002859580.1 adenylate kinase -
  OT390_RS03365 (OT390_03355) aspS 633370..635121 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28818.63 Da        Isoelectric Point: 7.0853

>NTDB_id=781556 OT390_RS03335 WP_394535924.1 629532..630305(+) (dprA) [Campylobacter sp. CFSAN122748]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGANFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=781556 OT390_RS03335 WP_394535924.1 629532..630305(+) (dprA) [Campylobacter sp. CFSAN122748]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCCATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAGCTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455