Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   OT625_RS07785 Genome accession   NZ_CP116951
Coordinates   1482749..1483060 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter sp. CFSAN122778     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477749..1488060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT625_RS07765 (OT625_07730) ctsE 1478618..1480177 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  OT625_RS07770 (OT625_07735) ctsX 1480167..1480754 (-) 588 WP_002851370.1 membrane protein Machinery gene
  OT625_RS07775 (OT625_07740) ctsP 1480758..1481366 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  OT625_RS07780 (OT625_07745) ctsD 1481359..1482771 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OT625_RS07785 (OT625_07750) ctsR 1482749..1483060 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  OT625_RS07790 (OT625_07755) nifJ 1483084..1486644 (-) 3561 WP_002871858.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  OT625_RS07795 (OT625_07760) - 1486737..1487378 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=781547 OT625_RS07785 WP_002855438.1 1482749..1483060(-) (ctsR) [Campylobacter sp. CFSAN122778]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=781547 OT625_RS07785 WP_002855438.1 1482749..1483060(-) (ctsR) [Campylobacter sp. CFSAN122778]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1