Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   OT625_RS07770 Genome accession   NZ_CP116951
Coordinates   1480167..1480754 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter sp. CFSAN122778     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1475167..1485754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT625_RS07750 (OT625_07715) - 1475915..1476679 (+) 765 WP_002851318.1 TIGR02757 family protein -
  OT625_RS07755 (OT625_07720) - 1476683..1477447 (+) 765 WP_100621807.1 TSUP family transporter -
  OT625_RS07760 (OT625_07725) ctsF 1477440..1478621 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  OT625_RS07765 (OT625_07730) ctsE 1478618..1480177 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  OT625_RS07770 (OT625_07735) ctsX 1480167..1480754 (-) 588 WP_002851370.1 membrane protein Machinery gene
  OT625_RS07775 (OT625_07740) ctsP 1480758..1481366 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  OT625_RS07780 (OT625_07745) ctsD 1481359..1482771 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OT625_RS07785 (OT625_07750) ctsR 1482749..1483060 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=781544 OT625_RS07770 WP_002851370.1 1480167..1480754(-) (ctsX) [Campylobacter sp. CFSAN122778]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=781544 OT625_RS07770 WP_002851370.1 1480167..1480754(-) (ctsX) [Campylobacter sp. CFSAN122778]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1