Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QZH48_RS05790 Genome accession   NZ_CP129879
Coordinates   1176476..1177711 (+) Length   411 a.a.
NCBI ID   WP_012897750.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171476..1182711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS05765 (QZH48_05765) - 1172310..1172903 (+) 594 WP_038601098.1 xanthine phosphoribosyltransferase -
  QZH48_RS05770 (QZH48_05770) - 1172952..1174256 (+) 1305 WP_003132095.1 nucleobase:cation symporter-2 family protein -
  QZH48_RS05775 (QZH48_05775) - 1174285..1174698 (-) 414 WP_098393868.1 hypothetical protein -
  QZH48_RS05780 (QZH48_05780) - 1174818..1175327 (-) 510 WP_058205658.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  QZH48_RS05785 (QZH48_05785) - 1175726..1176232 (+) 507 WP_038601089.1 dihydrofolate reductase -
  QZH48_RS05790 (QZH48_05790) clpX 1176476..1177711 (+) 1236 WP_012897750.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QZH48_RS05795 (QZH48_05795) yihA 1177708..1178295 (+) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QZH48_RS05800 (QZH48_05800) folB 1178349..1178699 (+) 351 WP_098393867.1 dihydroneopterin aldolase -
  QZH48_RS05805 (QZH48_05805) folE 1178779..1179828 (+) 1050 WP_301675907.1 GTP cyclohydrolase I FolE -
  QZH48_RS05810 (QZH48_05810) folP 1179825..1180898 (+) 1074 WP_003132109.1 dihydropteroate synthase -
  QZH48_RS05815 (QZH48_05815) - 1180901..1181398 (+) 498 WP_012897752.1 NUDIX domain-containing protein -
  QZH48_RS05820 (QZH48_05820) - 1181417..1182700 (+) 1284 WP_017864445.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46024.89 Da        Isoelectric Point: 4.6053

>NTDB_id=781192 QZH48_RS05790 WP_012897750.1 1176476..1177711(+) (clpX) [Lactococcus lactis subsp. lactis strain CAB701]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=781192 QZH48_RS05790 WP_012897750.1 1176476..1177711(+) (clpX) [Lactococcus lactis subsp. lactis strain CAB701]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGTGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAATATGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCTGTTTATAATCATTACAAACGAATTAATTTTACAGCAAGTAAAATTGCTGAAGATATCGAACT
ACAAAAATCAAATATTCTATTAATCGGACCTACTGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ATGTTCCGTTTGCGATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCAGAACGCGGAATTATCTATATCGATGAAATTGATAAAATTGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GGACAGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACATCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATTGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TTCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTTTGACCGAAGAAGATTTGATTCAAATTTTGACA
GAACCTAAAAATGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAAGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATAACAAAAGTTATTATTAATGAAGCAGTTGTTGATGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.808

97.567

0.749
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564