Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QZH48_RS01750 Genome accession   NZ_CP129879
Coordinates   343844..344440 (+) Length   198 a.a.
NCBI ID   WP_038599083.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 338844..349440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS01735 (QZH48_01735) ahpC 339216..339779 (+) 564 WP_003131651.1 alkyl hydroperoxide reductase subunit C -
  QZH48_RS01740 (QZH48_01740) ahpF 339845..341374 (+) 1530 WP_058204979.1 alkyl hydroperoxide reductase subunit F -
  QZH48_RS01745 (QZH48_01745) - 341540..343705 (+) 2166 WP_098393160.1 penicillin-binding transpeptidase domain-containing protein -
  QZH48_RS01750 (QZH48_01750) recR 343844..344440 (+) 597 WP_038599083.1 recombination mediator RecR Machinery gene
  QZH48_RS01755 (QZH48_01755) - 344557..345606 (+) 1050 WP_038599086.1 D-alanine--D-alanine ligase -
  QZH48_RS01760 (QZH48_01760) murF 345650..346972 (+) 1323 WP_301675774.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  QZH48_RS01765 (QZH48_01765) - 347142..348794 (+) 1653 WP_058204937.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21939.24 Da        Isoelectric Point: 4.8226

>NTDB_id=781165 QZH48_RS01750 WP_038599083.1 343844..344440(+) (recR) [Lactococcus lactis subsp. lactis strain CAB701]
MYYPEPIARLIESFSKLPGIGQKTATRLAFYTIGMEDQDVNEFAKNLLSAKRDLSFCSICGNLTESDPCTICTDPTRDRT
TILVVEESKDVLAMEKIREYRGLYHVLHGTISPMNGISPDEINVKTLITRLMDSEVKEVIIATNATSDGEATAMYLARMI
KPAGIKVTRLARGLAVGSDIEYADEITLSKAVENRLEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=781165 QZH48_RS01750 WP_038599083.1 343844..344440(+) (recR) [Lactococcus lactis subsp. lactis strain CAB701]
ATGTATTATCCTGAACCTATTGCTCGCCTGATTGAGTCGTTCTCAAAATTACCAGGGATTGGTCAAAAAACAGCGACTCG
ATTGGCTTTTTATACGATTGGCATGGAAGATCAAGATGTCAATGAATTTGCAAAAAATCTTCTGTCAGCAAAACGGGATT
TGAGTTTTTGCTCAATTTGCGGGAATTTAACAGAAAGTGATCCTTGTACCATTTGTACCGATCCAACGCGTGATCGAACA
ACTATATTGGTCGTTGAAGAATCTAAAGATGTTCTTGCTATGGAAAAAATCCGGGAATATCGAGGACTTTATCATGTTTT
GCATGGTACGATTAGTCCAATGAATGGAATTTCTCCTGATGAAATTAATGTTAAAACATTGATTACAAGATTAATGGATT
CAGAGGTTAAAGAAGTGATTATCGCAACTAATGCCACTTCTGACGGAGAAGCAACCGCCATGTATCTGGCTCGAATGATT
AAGCCTGCAGGAATTAAAGTCACTCGCTTGGCTCGAGGATTAGCTGTAGGGTCTGATATAGAATACGCAGATGAAATTAC
TTTATCAAAAGCAGTAGAGAATCGGTTGGAAATTTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

78.283

100

0.783
  recR Bacillus subtilis subsp. subtilis str. 168

59.596

100

0.596
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485