Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LOY12_RS09075 Genome accession   NZ_CP116909
Coordinates   1798316..1799302 (-) Length   328 a.a.
NCBI ID   WP_054194434.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AATYW     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1793316..1804302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY12_RS09050 (LOY12_009050) - 1793576..1793923 (-) 348 WP_001242103.1 hypothetical protein -
  LOY12_RS09055 (LOY12_009055) - 1794109..1794702 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  LOY12_RS09060 (LOY12_009060) - 1794806..1795171 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  LOY12_RS09065 (LOY12_009065) yjbH 1795194..1796000 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  LOY12_RS09070 (LOY12_009070) pepF 1796460..1798268 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  LOY12_RS09075 (LOY12_009075) coiA 1798316..1799302 (-) 987 WP_054194434.1 competence protein CoiA Machinery gene
  LOY12_RS09080 (LOY12_009080) mecA 1799423..1800142 (-) 720 WP_001217728.1 adaptor protein MecA -
  LOY12_RS09085 (LOY12_009085) spxA 1800513..1800908 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  LOY12_RS09090 (LOY12_009090) trpS 1801202..1802191 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  LOY12_RS09095 (LOY12_009095) opp4C 1802233..1803114 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  LOY12_RS09100 (LOY12_009100) opp4B 1803126..1804088 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38877.61 Da        Isoelectric Point: 9.6990

>NTDB_id=781117 LOY12_RS09075 WP_054194434.1 1798316..1799302(-) (coiA) [Staphylococcus aureus strain AATYW]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKKIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=781117 LOY12_RS09075 WP_054194434.1 1798316..1799302(-) (coiA) [Staphylococcus aureus strain AATYW]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAAAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

99.695

100

0.997
  coiA Staphylococcus aureus MW2

97.256

100

0.973