Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY12_RS03145 Genome accession   NZ_CP116909
Coordinates   632130..632525 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AATYW     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 627130..637525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY12_RS03115 (LOY12_003115) - 628388..628792 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LOY12_RS03120 (LOY12_003120) - 629130..629222 (+) 93 WP_001790611.1 hypothetical protein -
  LOY12_RS03125 (LOY12_003125) - 629354..629587 (+) 234 WP_000384523.1 DUF1146 family protein -
  LOY12_RS03130 (LOY12_003130) murA 629698..630963 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LOY12_RS03135 (LOY12_003135) fabZ 630997..631437 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LOY12_RS03140 (LOY12_003140) - 631496..631936 (-) 441 WP_000846746.1 YwpF-like family protein -
  LOY12_RS03145 (LOY12_003145) ssb 632130..632525 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LOY12_RS03150 (LOY12_003150) sceD 632914..633609 (+) 696 WP_054194472.1 lytic transglycosylase SceD -
  LOY12_RS03155 (LOY12_003155) tenA 633996..634685 (+) 690 WP_000396077.1 thiaminase II -
  LOY12_RS03160 (LOY12_003160) thiD 634678..635508 (+) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LOY12_RS03165 (LOY12_003165) thiM 635492..636283 (+) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  LOY12_RS03170 (LOY12_003170) thiE 636285..636926 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=781090 LOY12_RS03145 WP_000932694.1 632130..632525(+) (ssb) [Staphylococcus aureus strain AATYW]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=781090 LOY12_RS03145 WP_000932694.1 632130..632525(+) (ssb) [Staphylococcus aureus strain AATYW]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992