Detailed information NTG0780990

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PP263_RS12075
• Genome accession: NZ_CP116899
• Coordinates: 2890943..2892355 (+)
• Length: 470 a.a.
• NCBI ID: WP_308363760.1
• Uniprot ID: -
• Organism: Microbulbifer sp. TB1203
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2885943..2897355

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PP263_RS12060	-	2886567..2887505 (+)	939	WP_308363757.1	outer membrane protein assembly factor BamD	-
PP263_RS12065	-	2887558..2889183 (-)	1626	WP_308363758.1	NAD+ synthase	-
PP263_RS12070	-	2889301..2890896 (+)	1596	WP_308363759.1	ATP-binding protein	-
PP263_RS12075	pilR	2890943..2892355 (+)	1413	WP_308363760.1	sigma-54 dependent transcriptional regulator	Regulator
PP263_RS12080	-	2892478..2892909 (-)	432	WP_308363761.1	type IV pilin protein	-
PP263_RS12085	-	2892922..2897208 (-)	4287	WP_308363762.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 52279.79 Da
• Isoelectric Point: 5.2704

>NTDB_id=780990 PP263_RS12075 WP_308363760.1 2890943..2892355(+) (pilR) [Microbulbifer sp. TB1203]
MANRQPLALVVDDEPDICELLTLTLRRMDVHCHTAATLADAQQLLRDNNYDFCLTDMRLPDGNGLQLVRHIQEGDGELPI
AVITAHGNMELAIRALKMGAFDFVSKPVDLERLRGLVQLALRVGRKIPQPLQESDSAQLLLGESDNMQRLCRQIAKVARS
DAPVYISGESGSGKELVARAIHAQGARAEQPFLPINCGAIPAELMESEFFGHKKGSFTGAHKDKPGLFQSATGGTLFLDE
VADLPLDMQVKLLRAIQEKSIRPVGASQEIPIDVRILSATHKDLAREVAEGRFRSDLYYRINVIEISVPPLRERTGDIPL
LAETIMQRIADNAGVTPPQLSIEALDALKNYPFPGNVRQLENTLERAFTLSDQRIIRAEDLLLDREPIPLPTPEDSVAEA
IPQHSTTMELYPGQFDPSHYRSLDEFLQNIERSAIEEALAETRWNRTAAAQKLGISFRSLRYRLKKLGLE

Nucleotide

• Length: 1413 bp

>NTDB_id=780990 PP263_RS12075 WP_308363760.1 2890943..2892355(+) (pilR) [Microbulbifer sp. TB1203]
ATGGCAAACCGCCAACCGCTGGCACTGGTCGTCGACGACGAGCCGGATATCTGCGAACTGCTGACCCTGACCCTGCGGCG
CATGGATGTGCACTGCCACACCGCCGCAACGCTCGCCGATGCGCAGCAATTGCTGCGCGACAACAACTATGATTTCTGCC
TCACGGATATGCGCCTGCCGGATGGCAATGGCCTGCAACTGGTTCGGCATATACAGGAGGGAGATGGCGAATTGCCGATT
GCCGTCATTACCGCCCACGGCAATATGGAGTTGGCCATCCGGGCGCTGAAAATGGGCGCCTTCGATTTTGTCAGCAAGCC
GGTAGACCTGGAGCGCCTGCGCGGCCTGGTACAGCTGGCACTGCGTGTCGGGCGCAAAATCCCCCAGCCACTGCAGGAAA
GCGACTCCGCACAACTATTGCTCGGTGAATCGGACAATATGCAGCGCCTGTGCCGGCAGATCGCCAAGGTGGCCCGCAGC
GATGCACCCGTCTACATCAGTGGGGAGTCCGGCTCCGGCAAGGAACTGGTGGCCCGCGCCATCCACGCCCAGGGCGCCCG
CGCCGAGCAACCCTTCCTTCCCATCAACTGCGGGGCCATTCCCGCGGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AAGGCAGTTTTACCGGAGCCCACAAAGACAAACCCGGCCTCTTCCAGAGCGCCACCGGCGGCACTCTGTTCCTGGATGAA
GTGGCGGACCTGCCGCTGGACATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAAAGCATCCGCCCCGTAGGGGCCAG
CCAGGAAATTCCCATCGACGTGCGAATTCTAAGCGCGACCCACAAGGATCTGGCCAGGGAAGTTGCGGAGGGCCGTTTTC
GCAGCGATCTCTACTACCGGATCAATGTAATTGAAATCTCCGTACCGCCGCTGCGCGAGCGAACCGGGGATATTCCGCTG
CTCGCCGAAACCATCATGCAACGCATCGCTGATAATGCCGGCGTCACCCCGCCGCAGCTGTCCATTGAAGCGCTGGACGC
GCTGAAAAACTACCCATTTCCCGGCAATGTGCGCCAGTTGGAAAACACCCTGGAGCGGGCCTTCACCCTCAGCGACCAGC
GGATTATTCGCGCGGAGGACCTGTTGCTGGATCGGGAGCCCATTCCCCTGCCGACGCCGGAAGACTCCGTCGCAGAGGCG
ATTCCACAACATTCTACCACCATGGAACTCTACCCGGGTCAGTTCGACCCAAGCCACTACCGGTCTCTGGACGAGTTTCT
GCAAAATATCGAGCGGAGTGCGATCGAAGAAGCGCTGGCGGAGACCCGCTGGAACAGGACGGCCGCGGCGCAGAAGCTGG
GGATTAGTTTTCGTTCGTTGCGGTATCGGTTGAAGAAGTTGGGATTGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Response regulator receiver domain (Response_reg) (9-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.395	98.511	0.585
pilR	Acinetobacter baumannii strain A118	50.844	100	0.513