Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   PPM45_RS18575 Genome accession   NZ_CP116870
Coordinates   3613377..3613496 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3608377..3618496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS18555 albG 3608541..3609242 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  PPM45_RS18560 ywhL 3609248..3610624 (-) 1377 WP_003244415.1 YncE family protein -
  PPM45_RS18565 ywhK 3610663..3612018 (-) 1356 WP_003227552.1 YncE family protein -
  PPM45_RS20520 - 3612015..3612245 (-) 231 WP_009968328.1 hypothetical protein -
  PPM45_RS18570 rapF 3612248..3613393 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  PPM45_RS18575 phrF 3613377..3613496 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  PPM45_RS18580 ywhH 3613595..3614068 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  PPM45_RS18585 speB 3614100..3614972 (-) 873 WP_003227545.1 agmatinase -
  PPM45_RS18590 speE 3615033..3615863 (-) 831 WP_003227543.1 spermidine synthase -
  PPM45_RS18595 pbpG 3616065..3618140 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=780752 PPM45_RS18575 WP_009968329.1 3613377..3613496(+) (phrF) [Bacillus subtilis subsp. subtilis strain Master_strain]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=780752 PPM45_RS18575 WP_009968329.1 3613377..3613496(+) (phrF) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487